Jatropha Genome Database

JcCB0053361.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0053361.20 + phase: 0 /partial
         (508 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06333                                                            317   1e-86
KJC_c09840                                                            157   3e-38

>KJC_c06333 
          Length = 482

 Score =  317 bits (160), Expect = 1e-86
 Identities = 174/176 (98%), Gaps = 2/176 (1%)
 Strand = Plus / Minus

                                                                       
Query: 335 atggtgaaatttat-gtccaatt-gcaagaaagcgtcagaggatgtgatgtttatcttgt 392
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 481 atggtgaaatttatagtccaattagcaagaaagcgtcagaggatgtgatgtttatcttgt 422

                                                                       
Query: 393 tcaacccacatgtcctcctgcaaatgagaatcttatggagcttctgataatgattgatgc 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaacccacatgtcctcctgcaaatgagaatcttatggagcttctgataatgattgatgc 362

                                                                   
Query: 453 ttgtcggagagcatcggccaaaaatattactgctgtgattccatattttggttatg 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgtcggagagcatcggccaaaaatattactgctgtgattccatattttggttatg 306


>KJC_c09840 
          Length = 462

 Score =  157 bits (79), Expect = 3e-38
 Identities = 173/203 (85%), Gaps = 1/203 (0%)
 Strand = Plus / Minus

                                                                       
Query: 307 ggaaagatcaaaataaagcgtttt-gctgatggtgaaatttatgtccaattgcaagaaag 365
           ||||||||||| ||||| || ||| ||||||||||||||||||||||| |||||||||||
Sbjct: 438 ggaaagatcaacataaaacgatttagctgatggtgaaatttatgtccagttgcaagaaag 379

                                                                       
Query: 366 cgtcagaggatgtgatgtttatcttgttcaacccacatgtcctcctgcaaatgagaatct 425
            || |||||||||||||| |||||  | ||||| || || ||  | ||||||||||||||
Sbjct: 378 tgttagaggatgtgatgtatatctattacaaccaacctgcccctcagcaaatgagaatct 319

                                                                       
Query: 426 tatggagcttctgataatgattgatgcttgtcggagagcatcggccaaaaatattactgc 485
            ||||||||| |||| ||||| ||||| ||  |||||||||| || || ||||| |||||
Sbjct: 318 catggagcttttgatcatgatagatgcatgcaggagagcatcagcaaagaatatcactgc 259

                                  
Query: 486 tgtgattccatattttggttatg 508
           ||||||||| |||||||| ||||
Sbjct: 258 tgtgattccctattttggatatg 236