Jatropha Genome Database
- JcCB0050881.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0050881.20 + phase: 0 /partial
(456 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00119 373 e-103
KJC_c00090 341 9e-94
KJC_c12442 178 8e-45
KJC_c05363 101 1e-21
KJC_s13390 86 9e-17
>KJC_c00119
Length = 1664
Score = 373 bits (188), Expect = e-103
Identities = 389/456 (85%)
Strand = Plus / Minus
Query: 1 atggccgataacgaggatattcagccccttgtctgtgacaatggaacaggaatggtcaag 60
||||||||| ||||||||| |||||||| || || || |||||||| ||||||||||||
Sbjct: 1539 atggccgatgccgaggatatccagcccctggtttgcgataatggaactggaatggtcaag 1480
Query: 61 gccgggtttgctggagatgatgctccacgtgctgtgtttcccagcattgttggtcgtcct 120
|| ||||||||||| ||||||||||| | |||||||||||||| ||||||||| | ||
Sbjct: 1479 gctgggtttgctggtgatgatgctcccagggctgtgtttcccagtattgttggtagaccc 1420
Query: 121 cgtcacactggtgtgatggttggcatgggccaaaaagatgcttatgttggtgatgaggct 180
| ||||||||||| |||||||| ||||| || || ||||| |||||||||||||| ||
Sbjct: 1419 agacacactggtgttatggttgggatgggtcagaaggatgcctatgttggtgatgaagcc 1360
Query: 181 caatccaagagaggtattttgactttgaaatacccaattgagcatggtattgtgaataac 240
||||| || |||||||||||||| |||||||||||||||||||| |||||||| | |||
Sbjct: 1359 caatctaaaagaggtattttgaccttgaaatacccaattgagcacggtattgttagcaac 1300
Query: 241 tgggatgacatggaaaagatctggcatcacacgttctacaatgagcttcgtgttgcccca 300
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 1299 tgggatgatatggaaaagatctggcatcacactttctacaatgagcttcgagttgcacca 1240
Query: 301 gaagagcaccctgtacttctaactgaggctcctttgaatcccaaggctaatcgtgagaag 360
|| || ||||| || ||||| ||||| |||||| | || ||||| || || | || |||
Sbjct: 1239 gaggaacacccagtgcttctcactgaagctcctctcaaccccaaagccaacagagaaaag 1180
Query: 361 atgactcaaatcatgtttgagaccttcaatactcctgctatgtacgtggccattcaggct 420
||||| ||||||||||||||||| || ||| || || ||||| || ||||| ||||||
Sbjct: 1179 atgacccaaatcatgtttgagacatttaatgtgccagcaatgtatgtcgccatccaggct 1120
Query: 421 gttctatccttgtatgccagtggtcgaacaactggt 456
||||| || ||||||||||||||||| |||||||||
Sbjct: 1119 gttctgtctttgtatgccagtggtcgtacaactggt 1084
>KJC_c00090
Length = 1696
Score = 341 bits (172), Expect = 9e-94
Identities = 376/444 (84%)
Strand = Plus / Plus
Query: 13 gaggatattcagccccttgtctgtgacaatggaacaggaatggtcaaggccgggtttgct 72
|||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||||||
Sbjct: 114 gaggatatccagccccttgtatgtgataatggaactgggatggtcaaggctgggtttgct 173
Query: 73 ggagatgatgctccacgtgctgtgtttcccagcattgttggtcgtcctcgtcacactggt 132
|| |||||||| || | || || |||||||| |||||||| | ||| | ||||| |||
Sbjct: 174 ggtgatgatgcgcccagggcagtatttcccagtattgttggaagacctagacacaccggt 233
Query: 133 gtgatggttggcatgggccaaaaagatgcttatgttggtgatgaggctcaatccaagaga 192
|| |||||||| ||||| || || ||||| ||||| |||||||| || ||||| || |||
Sbjct: 234 gtcatggttgggatgggtcagaaggatgcctatgtcggtgatgaagcacaatctaaaaga 293
Query: 193 ggtattttgactttgaaatacccaattgagcatggtattgtgaataactgggatgacatg 252
|||||| |||| |||||||||||||||||||||||||| || | ||||||||||| |||
Sbjct: 294 ggtattctgaccttgaaatacccaattgagcatggtatcgtcagcaactgggatgatatg 353
Query: 253 gaaaagatctggcatcacacgttctacaatgagcttcgtgttgccccagaagagcaccct 312
|||||||||||||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct: 354 gaaaagatctggcatcacactttctacaatgagcttcgtgttgcccctgaggaacaccca 413
Query: 313 gtacttctaactgaggctcctttgaatcccaaggctaatcgtgagaagatgactcaaatc 372
|| ||||| || |||||||| | || || || || || | || |||||||||||||||
Sbjct: 414 gtgcttctcaccgaggctccactaaaccctaaagccaacagagaaaagatgactcaaatc 473
Query: 373 atgtttgagaccttcaatactcctgctatgtacgtggccattcaggctgttctatccttg 432
|||||||||||||| ||| ||||| ||||| || ||||| ||||| |||||||| |||
Sbjct: 474 atgtttgagacctttaatgtgcctgcaatgtatgttgccatccaggccgttctatctttg 533
Query: 433 tatgccagtggtcgaacaactggt 456
|||||||||||||| |||||||||
Sbjct: 534 tatgccagtggtcgtacaactggt 557
>KJC_c12442
Length = 323
Score = 178 bits (90), Expect = 8e-45
Identities = 156/174 (89%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 13 gaggatattcagccccttgtctgtgacaatggaacaggaatggtcaaggccgggtttgct 72
||||||||||||||||| || || |||||||| || |||||||||||||| || ||||||
Sbjct: 148 gaggatattcagcccctcgtatgcgacaatggtactggaatggtcaaggctggctttgct 207
Query: 73 ggagatgatgctccacgtgctgtgtttcccagcattgttggtcgtcctcgtcacactggt 132
||||||||||||||| | ||||| ||||| |||||||||||||| ||||||||||| |||
Sbjct: 208 ggagatgatgctccaagggctgtatttcctagcattgttggtcgccctcgtcacacaggt 267
Query: 133 gtgatggttggcatggg-ccaaaaagatgcttatgttggtgatgaggctcaatc 185
||||||| ||| ||||| |||||||||||| |||||| ||||||||||||||||
Sbjct: 268 gtgatgg-tggtatgggaccaaaaagatgcctatgtt-gtgatgaggctcaatc 319
>KJC_c05363
Length = 635
Score = 101 bits (51), Expect = 1e-21
Identities = 114/135 (84%)
Strand = Plus / Plus
Query: 322 actgaggctcctttgaatcccaaggctaatcgtgagaagatgactcaaatcatgtttgag 381
||||| |||||| | ||||| ||||||||||||||||| |||||||| || ||||| |||
Sbjct: 6 actgaagctcctctcaatcctaaggctaatcgtgagaaaatgactcagattatgttcgag 65
Query: 382 accttcaatactcctgctatgtacgtggccattcaggctgttctatccttgtatgccagt 441
||||| ||||||||||| ||||| || || || |||||||| || ||| | ||||||||
Sbjct: 66 acctttaatactcctgcaatgtatgttgctatccaggctgtcctttccctttatgccagc 125
Query: 442 ggtcgaacaactggt 456
||||| || ||||||
Sbjct: 126 ggtcgtaccactggt 140
>KJC_s13390
Length = 182
Score = 85.7 bits (43), Expect = 9e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 13 gaggatattcagccccttgtctgtgacaatggaacaggaatggtcaaggccgggtttgct 72
|||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||||||
Sbjct: 87 gaggatatccagccccttgtatgtgataatggaactgggatggtcaaggctgggtttgct 146
Query: 73 ggagatgatgc 83
|| ||||||||
Sbjct: 147 ggtgatgatgc 157