Jatropha Genome Database
- JcCB0046591.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0046591.10 - phase: 2 /pseudo/partial
(1084 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01341 839 0.0
KJC_c01697 488 e-137
KJC_c04849 182 1e-45
>KJC_c01341
Length = 805
Score = 839 bits (423), Expect = 0.0
Identities = 447/455 (98%)
Strand = Plus / Plus
Query: 494 aacatacatgcagggaggatacctggaaggtatggatttgttgatgaaagaaccaggcaa 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aacatacatgcagggaggatacctggaaggtatggatttgttgatgaaagaaccaggcaa 410
Query: 554 acaatgtctgaagcagtacctgatggtgctgttgtactgggtaatccagttgctcctcct 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acaatgtctgaagcagtacctgatggtgctgttgtactgggtaatccagttgctcctcct 470
Query: 614 ataaatggtgacatgtacactgatataagcactgaaaatgccatgctcccaggacctagg 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ataaatggtgacatgtacactgatataagcactgaaaatgccatgctcccaggacctagg 530
Query: 674 agaacgagtaagggtgtggagtatctggttgaagcatcggccgcagaagctgaggctatc 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agaacgagtaagggtgtggagtatctggttgaagcatcggccgcagaagctgaggctatc 590
Query: 734 agtgccactttggctgctgccaaggcacgccaggttaatggagaagttgaattgcctgac 793
|||||||||||||||||||||||||||| | || | |||||||||||||||||||||
Sbjct: 591 agtgccactttggctgctgccaaggcacacagggggataggagaagttgaattgcctgac 650
Query: 794 agggatcgtggtgctgaggcaaccccaagtggaaaacagatttctacattgattaagcct 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agggatcgtggtgctgaggcaaccccaagtggaaaacagatttctacattgattaagcct 710
Query: 854 gattcttctggatcaaataatattgttcctcctggagttcgactgcatcacagagctgtt 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gattcttctggatcaaataatattgttcctcctggagttcgactgcatcacagagctgtt 770
Query: 914 gttgtagctgcagaaactggtggagctttaggcgg 948
|||||||||||||||||||||||||||||| ||||
Sbjct: 771 gttgtagctgcagaaactggtggagctttaagcgg 805
Score = 167 bits (84), Expect = 7e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 352 ggctgcagttggtgacttgatatttatttatggtggtttacgtggtggggtgttgcttga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggctgcagttggtgacttgatatttatttatggtggtttacgtggtggggtgttgcttga 268
Query: 412 tgacttgcttgttgctgaggattt 435
||||||||||||||||||||||||
Sbjct: 269 tgacttgcttgttgctgaggattt 292
Score = 151 bits (76), Expect = 4e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 277 gttaatgcgagactccatgtgtctggaggtgcacttggaggcggtcggatggtagaagat 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttaatgcgagactccatgtgtctggaggtgcacttggaggcggtcggatggtagaagat 60
Query: 337 tcatccagtgttgcag 352
||||||||||||||||
Sbjct: 61 tcatccagtgttgcag 76
>KJC_c01697
Length = 1644
Score = 488 bits (246), Expect = e-137
Identities = 273/278 (98%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 808 tgaggcaaccccaagtggaaaacag-atttc-tacattgattaagcctgattcttctgga 865
|||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 1644 tgaggcaaacccgagtggaaaacaggatttcgtacattgattaagcctgattcttctgga 1585
Query: 866 tcaaataatattgttcctcctggagttcgactgcatcacagagctgttgttgtagctgca 925
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 tcaaataatat-gttcctcctggagttcgactgcatcacagagctgttgttgtagctgca 1526
Query: 926 gaaactggtggagctttaggcgggatggtcaggcaactttctattgatcagtttgaaaat 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 gaaactggtggagctttaggcgggatggtcaggcaactttctattgatcagtttgaaaat 1466
Query: 986 gaaggcagacgagtcagttatgggacgccagagagtgcaactgcagctaggaaactactg 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 gaaggcagacgagtcagttatgggacgccagagagtgcaactgcagctaggaaactactg 1406
Query: 1046 gatcgacagatgtccatcaatagtgtgcccaaaaaggt 1083
||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 gatcgacagatgtccatcaatagtgtgcccaaaaaggt 1368
>KJC_c04849
Length = 814
Score = 182 bits (92), Expect = 1e-45
Identities = 99/100 (99%), Gaps = 1/100 (1%)
Strand = Plus / Minus
Query: 1 gtatgccactgcaagtgctcgctcagatggtcttcttctgctttgtgggggcagagatgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 137 gtatgccactgcaagtgctcgctcagatggtcttcttctgctttgtgggg-cagagatgc 79
Query: 61 aaacagtgtgccactggcaagtgcatatggactagccaaa 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 aaacagtgtgccactggcaagtgcatatggactagccaaa 39