Jatropha Genome Database

JcCB0045901.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0045901.20 - phase: 2 /partial
         (628 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12188                                                            313   3e-85

>KJC_c12188 
          Length = 877

 Score =  313 bits (158), Expect = 3e-85
 Identities = 224/247 (90%), Gaps = 23/247 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   gataaatgaaaagatgagggctttaca-gagctttatacctcgatgcaacaagtcagaca 59
           ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 632 gataaatgaaaagatgagggctttacaagagctt-atacctcgatgcaacaagtcagaca 690

                                                                       
Query: 60  aagcttctatgttggatgaggcaattgaatacttgaaatcacttcagttgcaag------ 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 691 aagcttctatgttggatgaggcaattgaatacttgaaatcacttcagttgcaagtacaga 750

                                                                       
Query: 114 --------------tacagatgatgtccatgggatgcagcatggtcccgatgatgttctc 159
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ttgtaattaatttttacagatgatgtccatgggatgcagcatggtcccgatgatgttctc 810

                                                                       
Query: 160 aggcatccagcagtatatgccaccattggggat-gggaatgggaatgggcatgggcatgg 218
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 811 aggcatccagcagtatatgccaccattggggatggggaatgggaatgggcatgggcatgg 870

                  
Query: 219 acttggg 225
           |||||||
Sbjct: 871 acttggg 877