Jatropha Genome Database

JcCB0045441.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0045441.20 - phase: 2 /pseudo/partial
         (304 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06466                                                            222   4e-58

>KJC_c06466 
          Length = 795

 Score =  222 bits (112), Expect = 4e-58
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                       
Query: 186 aggcatatgcatgcgagattttccgtgaggaatatagtgctttaggattgtcaacagtga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aggcatatgcatgcgagattttccgtgaggaatatagtgctttaggattgtcaacagtga 210

                                                               
Query: 246 gtacggcatggggtataggattgatcattggtccagctctaggaggtttcct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gtacggcatggggtataggattgatcattggtccagctctaggaggtttcct 262



 Score =  204 bits (103), Expect = 9e-53
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 29  agttatcttcaacaccctctttggccttagcacaaatttttggatggctatcgctacaag 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  agttatcttcaacaccctctttggccttagcacaaatttttggatggctatcgctacaag 109

                                                      
Query: 89  gttttttcttgggagtttcaacggtttacttggacctataaag 131
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gttttttcttgggagtttcaacggtttacttggacctataaag 152