Jatropha Genome Database

JcCB0045201.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0045201.10 + phase: 0 
         (1050 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09252                                                            624   e-178

>KJC_c09252 
          Length = 374

 Score =  624 bits (315), Expect = e-178
 Identities = 322/323 (99%), Gaps = 1/323 (0%)
 Strand = Plus / Minus

                                                                        
Query: 707  aagcaacagataggctctgctcgaaattagatgctgctgcatctgatggggaagatgtag 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374  aagcaacagataggctctgctcgaaattagatgctgctgcatctgatggggaagatgtag 315

                                                                        
Query: 767  agatggaatcccttttttctcgcttgacattggatatcattgggaaggcagtatttaatt 826
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314  agatggaatcccttttt-ctcgcttgacattggatatcattgggaaggcagtatttaatt 256

                                                                        
Query: 827  atgagtttgactcgctcacaaatgacactggaatagttgaggctgtttacacagttctaa 886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255  atgagtttgactcgctcacaaatgacactggaatagttgaggctgtttacacagttctaa 196

                                                                        
Query: 887  gagaagcagaagatcgaagtgttgcaccaattccagtatgggagatcccagtttggaaag 946
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195  gagaagcagaagatcgaagtgttgcaccaattccagtatgggagatcccagtttggaaag 136

                                                                        
Query: 947  acatttcaccacgtcaaaggaaagtttcagcagccctcaagttgatcaatgatatacttg 1006
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135  acatttcaccacgtcaaaggaaagtttcagcagccctcaagttgatcaatgatatacttg 76

                                   
Query: 1007 atgatctaatagcaatatgcaag 1029
            |||||||||||||||||||||||
Sbjct: 75   atgatctaatagcaatatgcaag 53