Jatropha Genome Database

JcCB0045051.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0045051.10 + phase: 0 /partial
         (430 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02339                                                            805   0.0  

>KJC_c02339 
          Length = 1002

 Score =  805 bits (406), Expect = 0.0
 Identities = 426/430 (99%), Gaps = 2/430 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaagaagaaagagaaactggaaataagaacagtttggtttttgctgttaatggaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 atggaagaagaaagagaaactggaaataagaacagtttggtttttgctgttaatggaaag 860

                                                                       
Query: 61  agatttgagctttctagtgttgatccttctacgactttgcttgaattcctgcgtacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 agatttgagctttctagtgttgatccttctacgactttgcttgaattcctgcgtacacag 800

                                                                       
Query: 121 actagtttcaaaagcgtcaagctcggttgcggtgaaggtggttgtggtgcttgtgtcgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 actagtttcaaaagcgtcaagctcggttgcggtgaaggtggttgtggtgcttgtgtcgtt 740

                                                                       
Query: 181 ttgctctccaagtacaatccagtgcttgaccaagttgaggatcttacagtgagctcatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 739 ttgctctccaagtacaatccagtgcttgaccaagttgaggatcttacggtgagctcatgt 680

                                                                       
Query: 241 cttacgctcctctgcagcataaatagagcctcaatcacaacaagtgaaggccttggtaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cttacgctcctctgcagcataaatagagcctcaatcacaacaagtgaaggccttggtaat 620

                                                                       
Query: 301 agtaaagatggtttccactcaattcaccaaaggttcagtggattccatgcttcccaatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agtaaagatggtttccactcaattcaccaaaggttcagtggattccatgcttcccaatgt 560

                                                                       
Query: 361 ggcttttgtactcctggaatgtgcatgtccttgtttggagcccttgttaaagctgaaaaa 420
           ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 559 ggc-tttgtact-ctggaatgtgcatgtccttctttggagcccttgttaaagctgaaaaa 502

                     
Query: 421 actgatagac 430
           ||||||||||
Sbjct: 501 actgatagac 492