Jatropha Genome Database

JcCB0042121.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0042121.10 + phase: 0 /partial
         (1304 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04736                                                            541   e-153

>KJC_c04736 
          Length = 531

 Score =  541 bits (273), Expect = e-153
 Identities = 273/273 (100%)
 Strand = Plus / Plus

                                                                        
Query: 904  gttgatccagaagatgcacccaatcaacctgaatatgtagaaatcgggatagagtcggga 963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gttgatccagaagatgcacccaatcaacctgaatatgtagaaatcgggatagagtcggga 60

                                                                        
Query: 964  attcctgtttcagttaatggcaagaagctttccccagcttctcttctttctgagctcaat 1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   attcctgtttcagttaatggcaagaagctttccccagcttctcttctttctgagctcaat 120

                                                                        
Query: 1024 gacattggtggaagacatggtgttggtcgtattgacatggttgaaaaccgacttgttggt 1083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  gacattggtggaagacatggtgttggtcgtattgacatggttgaaaaccgacttgttggt 180

                                                                        
Query: 1084 atgaaaagccgcggcgtttatgaaactcctggaggaaccattctctacagtgctgcacgc 1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  atgaaaagccgcggcgtttatgaaactcctggaggaaccattctctacagtgctgcacgc 240

                                             
Query: 1144 gaactggagtcgttaactctcgatagagaaacg 1176
            |||||||||||||||||||||||||||||||||
Sbjct: 241  gaactggagtcgttaactctcgatagagaaacg 273