Jatropha Genome Database

JcCB0041791.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0041791.20 - phase: 0 
         (576 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08804                                                            793   0.0  

>KJC_c08804 
          Length = 467

 Score =  793 bits (400), Expect = 0.0
 Identities = 414/416 (99%), Gaps = 2/416 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcaacaaccgtacatttctctcctttcttttgtgctgctttctcgagcaacaaaaac 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 418 atggcaacaaccgtacatttctctcctt-cttttgtgctgctttctcgagca-caaaaac 361

                                                                       
Query: 61  ttgaacaagtgctgttttggttctgttgaagcacgcaaatctagtttcagaagcttcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttgaacaagtgctgttttggttctgttgaagcacgcaaatctagtttcagaagcttcaag 301

                                                                       
Query: 121 gcgagagccattaaagagaaaacagaagagaggaaaaatccacaatcatcatcttcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gcgagagccattaaagagaaaacagaagagaggaaaaatccacaatcatcatcttcttct 241

                                                                       
Query: 181 tcagctgaagaaattgccaaaaagtatggtctggaagctggtctgtggaagatattcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcagctgaagaaattgccaaaaagtatggtctggaagctggtctgtggaagatattcagc 181

                                                                       
Query: 241 acaaaagaggaacaagatggagaggaaaagaaatcaaagggtgagcaagcaaaggagctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 acaaaagaggaacaagatggagaggaaaagaaatcaaagggtgagcaagcaaaggagctg 121

                                                                       
Query: 301 ctagcaaaatatggaggagcatacctggccacatcaattactctctccttaatctccttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctagcaaaatatggaggagcatacctggccacatcaattactctctccttaatctccttt 61

                                                                   
Query: 361 tctctctgttatgcactcattagcgcaggcattgatgtccaagctttgctgcaaaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  tctctctgttatgcactcattagcgcaggcattgatgtccaagctttgctgcaaaa 5