Jatropha Genome Database

JcCB0041541.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0041541.20 - phase: 2 /pseudo/partial
         (481 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11037                                                            813   0.0  

>KJC_c11037 
          Length = 524

 Score =  813 bits (410), Expect = 0.0
 Identities = 424/426 (99%), Gaps = 2/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 57  agactgaagtgttaaagaagttgtctatgatgcatcatgttgttgtttctactggtggag 116
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agactgaagtgttaa-gaagttgtctatgatgcatcatgttgttgtttctactggtggag 461

                                                                       
Query: 117 gtgcagttgtccggcctattaactggcaacacatgcggaagggaattagtgtctggttgg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtgcagttgtccggcctattaactggcaacacatgcggaagggaattagtgtctggttgg 401

                                                                       
Query: 177 atgtgcctttggaagccttggcacagagaattgcagctgttggaactgaatctcgccccc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atgtgcctttggaagccttggcacagagaattgcagctgttggaactgaatctcgccccc 341

                                                                       
Query: 237 ttttgaatcatgaatctggcgatgcatacacaaaggctttcaggcgcttgtctgctcttc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttttgaatcatgaatctggcgatgcatacacaaaggctttcaggcgcttgtctgctcttc 281

                                                                       
Query: 297 ttgaagaaagaggtgaa-ttttatgcaaatgccaatacaagggtttctctggaaaatatt 355
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttgaagaaagaggtgaatttttatgcaaatgccaatacaagggtttctctggaaaatatt 221

                                                                       
Query: 356 gctgcaaaactaggatatagagatgtttctagtatctcaccaactgcaattgcaattgag 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gctgcaaaactaggatatagagatgtttctagtatctcaccaactgcaattgcaattgag 161

                                                                       
Query: 416 gctctggaacaaattgggaatttcctagaggaagaggagggcattgcctataatccgaat 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gctctggaacaaattgggaatttcctagaggaagaggagggcattgcctataatccgaat 101

                 
Query: 476 ttagcc 481
           ||||||
Sbjct: 100 ttagcc 95