Jatropha Genome Database

JcCB0034881.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0034881.20 + phase: 0 /pseudo
         (476 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08706                                                            799   0.0  
KJC_c02276                                                             52   1e-06

>KJC_c08706 
          Length = 1180

 Score =  799 bits (403), Expect = 0.0
 Identities = 403/403 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagaatttgatttctctggttaataaaatacagagagcttgtacggctctcggtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 atggagaatttgatttctctggttaataaaatacagagagcttgtacggctctcggtgat 249

                                                                       
Query: 61  catggtgaagcaagcgcattgcctactctctgggactccttgcctgctattgcggtcgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 catggtgaagcaagcgcattgcctactctctgggactccttgcctgctattgcggtcgtc 309

                                                                       
Query: 121 ggtggccagagttcaggaaagtcttcagtgttggagagcgttgttgggaaggacttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggtggccagagttcaggaaagtcttcagtgttggagagcgttgttgggaaggacttttta 369

                                                                       
Query: 181 cctcgtggatctggaattgttacacgacggcctcttgtgttgcagcttcacaagagtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cctcgtggatctggaattgttacacgacggcctcttgtgttgcagcttcacaagagtgat 429

                                                                       
Query: 241 gaaggtagcagagaatatgcagagttccttcacctcccaaggaaaaggttcaccgatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaaggtagcagagaatatgcagagttccttcacctcccaaggaaaaggttcaccgatttt 489

                                                                       
Query: 301 gctgctgtgcggaaagagattcaggatgagactgatcgagagactgggcgcacaaaacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gctgctgtgcggaaagagattcaggatgagactgatcgagagactgggcgcacaaaacaa 549

                                                      
Query: 361 atctctagtgttccaattcatttgagtatatactctcccaatg 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atctctagtgttccaattcatttgagtatatactctcccaatg 592


>KJC_c02276 
          Length = 1129

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 110 ttgcggtcgtcggtggccagagttcaggaaagtcttcagtgttggagagc 159
           |||| ||||| ||||| |||||||||||||| ||||| || |||||||||
Sbjct: 258 ttgctgtcgttggtgggcagagttcaggaaaatcttctgtcttggagagc 307