Jatropha Genome Database

JcCB0032921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0032921.10 - phase: 0 /pseudo/partial
         (888 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04585                                                            563   e-160

>KJC_c04585 
          Length = 648

 Score =  563 bits (284), Expect = e-160
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 394 gctgttgagaaacatgtactagaatctggttcaattgatactgttggtacagtaggtatt 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gctgttgagaaacatgtactagaatctggttcaattgatactgttggtacagtaggtatt 226

                                                                       
Query: 454 ctggacttgcatcctggagcaatcaatagcattccaagcaaatcacatctagaaattgac 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ctggacttgcatcctggagcaatcaatagcattccaagcaaatcacatctagaaattgac 166

                                                                       
Query: 514 acacgggatattgatgaagaacgacgaaatggcgtaattgagaagattaagcaatccgca 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 acacgggatattgatgaagaacgacgaaatggcgtaattgagaagattaagcaatccgca 106

                                                                       
Query: 574 ataacaatagcaaaaaaccgtggggtcaagctatcagaattcaatattataaatcaggac 633
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ataacaatagcaaaaaaccgtggggtcaagctatcagaattcaatattataaatcaggac 46

                                                       
Query: 634 ccaccagccctttctgataaatcagtaattgaggcaatggaagc 677
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ccaccagccctttctgataaatcagtaattgaggcaatggaagc 2



 Score =  539 bits (272), Expect = e-153
 Identities = 272/272 (100%)
 Strand = Plus / Minus

                                                                       
Query: 122 gctctcaagaatacatttgatagtcaaaatgtatcctttgtagaggctgctagatccgca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gctctcaagaatacatttgatagtcaaaatgtatcctttgtagaggctgctagatccgca 535

                                                                       
Query: 182 ggttatgcaaaagatcaagatgatttgtcgagtgttttcttaaagaatggaagttactct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ggttatgcaaaagatcaagatgatttgtcgagtgttttcttaaagaatggaagttactct 475

                                                                       
Query: 242 gcttttctggagctgcatatagaacagggtcccattctggaggctgaaggtctatcaatt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gcttttctggagctgcatatagaacagggtcccattctggaggctgaaggtctatcaatt 415

                                                                       
Query: 302 ggtattgtaactgcaattgcggccccagcaagcataaaagtagattttgaaggcaatggg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggtattgtaactgcaattgcggccccagcaagcataaaagtagattttgaaggcaatggg 355

                                           
Query: 362 ggccatgcaggtgctgtcttgatgcctaacag 393
           ||||||||||||||||||||||||||||||||
Sbjct: 354 ggccatgcaggtgctgtcttgatgcctaacag 323