Jatropha Genome Database

JcCB0031431.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0031431.30 - phase: 0 
         (1488 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09198                                                             52   4e-06
KJC_c03893                                                             52   4e-06

>KJC_c09198 
          Length = 756

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 205 ttcaagcacaacaacttctctagctt 230
           ||||||||||||||||||||||||||
Sbjct: 485 ttcaagcacaacaacttctctagctt 460


>KJC_c03893 
          Length = 463

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 66/78 (84%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                       
Query: 228 cttcataagacagttgaatacctatggatttagaaagattgatcctgagaaatgggaatt 287
           |||||| |||||| |||| || ||||| |||||||||   ||||| ||  ||||||||||
Sbjct: 463 cttcatcagacagctgaacacatatgg-tttagaaaggccgatccagaacaatgggaatt 405

                             
Query: 288 tgccaatgaagattttgt 305
           ||| ||||||||||||||
Sbjct: 404 tgcaaatgaagattttgt 387