Jatropha Genome Database
- JcCB0030731.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0030731.10 + phase: 0
(1227 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c11540 642 0.0
KJC_c00657 70 1e-11
>KJC_c11540
Length = 445
Score = 642 bits (324), Expect = 0.0
Identities = 416/447 (93%), Gaps = 24/447 (5%)
Strand = Plus / Minus
Query: 474 gatgtcctcacaggatg-caactaa--tacggtttacaagtgcatgttgagaggtgctgc 530
||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 445 gatgtcctcacaggatgacaactaagttacggtt-acaagtgcatgttgagaggtgctgc 387
Query: 531 tgactatcttgttaaacctatacggaaaaatgaactgagaaatttgtggcagcat----- 585
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgactatcttgt-aaacctatacggaaaaatgaactgagaaatttgtggcagcatgtatg 328
Query: 586 -------------tctcttgctgaggtagatggcctccaagatgaaagtgttggacagga 632
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gagaagacaatcttctcttgctgaggtagatggcctccaagatgaaagtgttggacagga 268
Query: 633 taaggtagaggctacttcagaaaataatgctgccagtaatcattcaagtggcaacatggc 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taaggtagaggctacttcagaaaataatgctgccagtaatcattcaagtggcaacatggc 208
Query: 693 ttgtattcaacaaaataaagaattcattgagaaaggaagtgatgctcagagctcttgtac 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttgtattcaacaaaataaagaattcattgagaaaggaagtgatgctcagagctcttgtac 148
Query: 753 aaagccagatgcagaagctgagagcgcccacatggaaaataagcgggaccttttatgggg 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 aaagccagatgcagaagctgagagcgcccacatggaaaataagcgggaccttttatgggg 88
Query: 813 caa-nnnnnnnctgaatggcataaaaatgcagaaacatgaagcaatcacaaattatggtc 871
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 caattttttttctgaatggcataaaaatgcagaaacatgaagcaatcacaaattatggtc 28
Query: 872 agaaattggttatgcatgagaatcaag 898
|||||||||||||||||||||||||||
Sbjct: 27 agaaattggttatgcatgagaatcaag 1
>KJC_c00657
Length = 940
Score = 69.9 bits (35), Expect = 1e-11
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 232 attatagctgctctgctcaggaaatgcagttacaaagttgttgctgttccagatggctta 291
||||| |||||||| || | ||||||||||||| ||||| ||||||||| ||||| |||
Sbjct: 338 attatcgctgctcttcttcgaaaatgcagttacagagttgctgctgttcctgatggatta 397
Query: 292 aaggcatgggagatgctgagaggaaggccccataaaatagaccttattttgacagaagtt 351
| ||||||||||| | | || |||||||||| ||||| || ||||| ||||||||
Sbjct: 398 atggcatgggagaccttaaagggtaggccccatagcatagatctcattttaacagaagta 457
Query: 352 gatttaccttcaatatctggata 374
|| || || |||||||| |||||
Sbjct: 458 gagttgccatcaatatcgggata 480