Jatropha Genome Database
- JcCB0030651.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0030651.10 + phase: 0
(1035 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c12975 1372 0.0
KJC_c06411 741 0.0
KJC_c00160 258 2e-68
KJC_c01795 80 1e-14
KJC_s15248 76 2e-13
>KJC_c12975
Length = 707
Score = 1372 bits (692), Expect = 0.0
Identities = 706/708 (99%), Gaps = 2/708 (0%)
Strand = Plus / Minus
Query: 25 gtcaacgaaag-caagatggtggttcctctgaatacctgggtcctaatatccaattttaa 83
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gtcaacgaaagacaagatggtggttcctctgaatacctgggtcctaatatccaattttaa 648
Query: 84 gttggcctacaatcttctccgtcgtcctgatggcacttttaatcgtcacttggcagagtt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gttggcctacaatcttctccgtcgtcctgatggcacttttaatcgtcacttggcagagtt 588
Query: 144 ccttgaccggaaagttcaagccaatgcaaacccagttgatggggttttctcttttgatgt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccttgaccggaaagttcaagccaatgcaaacccagttgatggggttttctcttttgatgt 528
Query: 204 tattattgatcgtgggactagcctccttagccggatctatcgaccagcagatggggagca 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tattattgatcgtgggactagcctccttagccggatctatcgaccagcagatggggagca 468
Query: 264 attacaaccatctatctctgaacttgagaagcctgtatgctctgagattgtccctgtcat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 attacaaccatctatctctgaacttgagaagcctgtatgctctgagattgtccctgtcat 408
Query: 324 tctcttctttcatggcggaagctttgcacattcttctgctaacagtgctatatatgacac 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tctcttctttcatggcggaagctttgcacattcttctgctaacagtgctatatatgacac 348
Query: 384 gctttgtcgccgactggtgggcatttgcaaggctgtggtggtctctgtgaattacaggcg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gctttgtcgccgactggtgggcatttgcaaggctgtggtggtctctgtgaattacaggcg 288
Query: 444 tgcgcctgaaaatcgatatccttgtgcgtacgatgatggatggacagctcttaagtgggt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgcgcctgaaaatcgatatccttgtgcgtacgatgatggatggacagctcttaagtgggt 228
Query: 504 taactcaagaacatggcttgagagtaagaaagattcgaaagttcatatatttttggcagg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 taactcaagaacatggcttgagagtaagaaagattcgaaagttcatatatttttggcagg 168
Query: 564 ggatagctctggtggtaacattgtacaccatgttgctttaagagcagtggagtcaggaat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ggatagctctggtggtaacattgtacaccatgttgctttaagagcagtggagtcaggaat 108
Query: 624 tgaagtattgggtaacatattgctcaacccaatgtttggtgggcaagagagaacagaatc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tgaagtattgggtaacatattgctcaacccaatgtttggtgggcaagagagaacagaatc 48
Query: 684 agagaagcgattagatggaaaatattttgtcactctccaggaccggga 731
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 47 agagaagcgattagatggaaaatattttg-cactctccaggaccggga 1
>KJC_c06411
Length = 583
Score = 741 bits (374), Expect = 0.0
Identities = 374/374 (100%)
Strand = Plus / Plus
Query: 662 gtgggcaagagagaacagaatcagagaagcgattagatggaaaatattttgtcactctcc 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggcaagagagaacagaatcagagaagcgattagatggaaaatattttgtcactctcc 60
Query: 722 aggaccgggactggtattggagagcttttctccctgaaggagcagacagggatcatccag 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggaccgggactggtattggagagcttttctccctgaaggagcagacagggatcatccag 120
Query: 782 catgtaatccatttggtccaaaaggtaaaagccttgaaggagtgaaattccccaagaatc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catgtaatccatttggtccaaaaggtaaaagccttgaaggagtgaaattccccaagaatc 180
Query: 842 ttgttgtggtggctggtttggaccttattcaagactggcaattggcttatgttgaaggac 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgttgtggtggctggtttggaccttattcaagactggcaattggcttatgttgaaggac 240
Query: 902 ttaagaaggctggtcaagttgtgaaacttctgtatcttgagcaagcaacaattggcttct 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaagaaggctggtcaagttgtgaaacttctgtatcttgagcaagcaacaattggcttct 300
Query: 962 acttgttgcccaataataatcactttcataccgtcatggatgagataagtaaatttgtgt 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acttgttgcccaataataatcactttcataccgtcatggatgagataagtaaatttgtgt 360
Query: 1022 gttgtgactgttaa 1035
||||||||||||||
Sbjct: 361 gttgtgactgttaa 374
>KJC_c00160
Length = 1638
Score = 258 bits (130), Expect = 2e-68
Identities = 544/682 (79%)
Strand = Plus / Plus
Query: 305 ctgagattgtccctgtcattctcttctttcatggcggaagctttgcacattcttctgcta 364
||||||||||||| || || ||||||| ||||| |||||||| | || || ||||| |
Sbjct: 605 ctgagattgtcccagttataatcttcttccatggtggaagcttcactcactcctctgcca 664
Query: 365 acagtgctatatatgacacgctttgtcgccgactggtgggcatttgcaaggctgtggtgg 424
| |||||||| || ||||| |||||||||| || ||| ||||||| ||||| || |
Sbjct: 665 atagtgctatctacgacaccttttgtcgccgccttgtgaatgtttgcaaagctgttgtag 724
Query: 425 tctctgtgaattacaggcgtgcgcctgaaaatcgatatccttgtgcgtacgatgatggat 484
| ||||| ||||| | || | |||||| |||| || || ||||| || |||||||| |
Sbjct: 725 tatctgttaattatcgccggtcacctgaatatcgctacccatgtgcatatgatgatggtt 784
Query: 485 ggacagctcttaagtgggttaactcaagaacatggcttgagagtaagaaagattcgaaag 544
|| ||||| ||||||||||||| |||||||| |||||| | ||| ||| ||||||||||
Sbjct: 785 gggcagcttttaagtgggttaaatcaagaacttggcttcaaagtgggaaggattcgaaag 844
Query: 545 ttcatatatttttggcaggggatagctctggtggtaacattgtacaccatgttgctttaa 604
||||| ||| ||||||||||||||| || |||||||| || | ||||||||||| | |
Sbjct: 845 ttcatgtatatttggcaggggatagttcaggtggtaatatagctcaccatgttgcagtta 904
Query: 605 gagcagtggagtcaggaattgaagtattgggtaacatattgctcaacccaatgtttggtg 664
|||||| || ||| |||||| ||||||||||| || | || | ||||||||||| |
Sbjct: 905 gagcagcagaagcagaaattgaggtattgggtaatattcttcttcatccaatgtttggcg 964
Query: 665 ggcaagagagaacagaatcagagaagcgattagatggaaaatattttgtcactctccagg 724
||||| |||||| ||||| ||| | |||||||||||||||||||||| || || |
Sbjct: 965 ggcaaatgagaactgaatcggagcaaagattagatggaaaatattttgttacaactcaag 1024
Query: 725 accgggactggtattggagagcttttctccctgaaggagcagacagggatcatccagcat 784
|||| || |||||||||||||| | ||| || ||||| | ||| || || |||||||| |
Sbjct: 1025 accgcgattggtattggagagcatatctacccgaaggggaagatagagaccatccagcgt 1084
Query: 785 gtaatccatttggtccaaaaggtaaaagccttgaaggagtgaaattccccaagaatcttg 844
| ||| ||||||||||| ||| |||| |||||||||| | || || || || | ||| |
Sbjct: 1085 gcaatatatttggtccaagagggaaaaaccttgaaggaattaattttcctaaaagtctag 1144
Query: 845 ttgtggtggctggtttggaccttattcaagactggcaattggcttatgttgaaggactta 904
|||| |||||||||||||| ||| ||||||| |||||||| |||||||||||||| ||
Sbjct: 1145 ttgttgtggctggtttggatcttgttcaagattggcaattagcttatgttgaagggctcc 1204
Query: 905 agaaggctggtcaagttgtgaaacttctgtatcttgagcaagcaacaattggcttctact 964
|||| ||||| || | ||||||||||| ||||| |||||| ||||| || |||||||
Sbjct: 1205 agaaagctggccatgaagtgaaacttctttatctaaggcaagctacaataggtttctact 1264
Query: 965 tgttgcccaataataatcactt 986
| || || |||||| |||||||
Sbjct: 1265 ttttaccaaataatgatcactt 1286
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 121 tttaatcgtcacttggcagagttccttgaccggaaagt 158
||||||||| | ||||||||||| ||||||||||||||
Sbjct: 421 tttaatcgtgatttggcagagtttcttgaccggaaagt 458
>KJC_c01795
Length = 1193
Score = 79.8 bits (40), Expect = 1e-14
Identities = 47/48 (97%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 989 ataccgtcatggatgagataagt-aaatttgtgtgttgtgactgttaa 1035
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ataccgtcatggatgagataagtaaaatttgtgtgttgtgactgttaa 48
>KJC_s15248
Length = 555
Score = 75.8 bits (38), Expect = 2e-13
Identities = 173/218 (79%)
Strand = Plus / Minus
Query: 305 ctgagattgtccctgtcattctcttctttcatggcggaagctttgcacattcttctgcta 364
||||||||||||| || || ||||||| ||||| |||||||| | || || ||||| |
Sbjct: 546 ctgagattgtcccagttataatcttcttccatggtggaagcttcactcactcctctgcca 487
Query: 365 acagtgctatatatgacacgctttgtcgccgactggtgggcatttgcaaggctgtggtgg 424
| |||||||| || ||||| |||||||||| || ||| ||||||| ||||| || |
Sbjct: 486 atagtgctatctacgacaccttttgtcgccgccttgtgaatgtttgcaaagctgttgtag 427
Query: 425 tctctgtgaattacaggcgtgcgcctgaaaatcgatatccttgtgcgtacgatgatggat 484
| ||||| ||||| | || | |||||| |||| || || ||||| || |||||||| |
Sbjct: 426 tatctgttaattatcgccggtcacctgaatatcgctacccatgtgcatatgatgatggtt 367
Query: 485 ggacagctcttaagtgggttaactcaagaacatggctt 522
|| ||||| ||||||||||||| |||||||| ||||||
Sbjct: 366 gggcagcttttaagtgggttaaatcaagaacttggctt 329