Jatropha Genome Database
- JcCB0028581.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0028581.20 - phase: 0 /partial
(852 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c09914 759 0.0
KJC_c03564 456 e-128
KJC_c12560 347 3e-95
KJC_c03583 103 7e-22
KJC_c00976 72 2e-12
KJC_c09398 64 6e-10
KJC_c01204 56 1e-07
>KJC_c09914
Length = 423
Score = 759 bits (383), Expect = 0.0
Identities = 418/425 (98%), Gaps = 4/425 (0%)
Strand = Plus / Minus
Query: 209 tgctggcatattgtactcttcctgccgtgtgtttgctaaccgggaaatttatcactccag 268
||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 423 tgctggcatattgtactgttcctgccgtgngtttgctaaccgggaa-tttatcactccag 365
Query: 269 agctaagcaacgccgcaagcttgtggttttt-gtcacttttcatttgtatttttgcaaca 327
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 364 agctaagcaacgccgcaagcttgnggttttttgtcacttttcatttgtatttttgcaaca 305
Query: 328 agtatactggaaatgagatggagtggagttgggcttgatgattggtggagaaacgagc-a 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 304 agtatactggaaatgagatggagtggagttgggcttgatgattggtggagaaacgagcga 245
Query: 387 attttgggtgattggaggagtgtcagcacatctatttgctgttttccagggtctgttaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 attttgggtgattggaggagtgtcagcacatctatttgctgttttccagggtctgttaaa 185
Query: 447 ggttctggctggtgttgatacaaacttcactgtgacatcaaaagcaggagacgatgaaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ggttctggctggtgttgatacaaacttcactgtgacatcaaaagcaggagacgatgaaga 125
Query: 507 gttttcggagctatatgcatttaaatggacaaccttactcattccaccaacaacgttgct 566
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 g-tttcggagctatatgcatttaaatggacaaccttactcattccaccaacaacgttgct 66
Query: 567 gataataaatctgataggagtagttgctggcgtctcaaatgcaataaataatgggtacga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gataataaatctgataggagtagttgctggcgtctcaaatgcaataaataatgggtacga 6
Query: 627 gtcgt 631
|||||
Sbjct: 5 gtcgt 1
>KJC_c03564
Length = 947
Score = 456 bits (230), Expect = e-128
Identities = 230/230 (100%)
Strand = Plus / Minus
Query: 1 tgcattcctgacaggcctgcatttaaaggttctgcgcccatcaatctttccgatcgtcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tgcattcctgacaggcctgcatttaaaggttctgcgcccatcaatctttccgatcgtcta 171
Query: 61 catcaggtccttcggtgggctcttggatctgttgaaatatttttaagcaggcactgtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 catcaggtccttcggtgggctcttggatctgttgaaatatttttaagcaggcactgtcct 111
Query: 121 ctgtggtatggttatggaggaggtttgaagtggctagagcgtttgtcttacataaatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctgtggtatggttatggaggaggtttgaagtggctagagcgtttgtcttacataaatgct 51
Query: 181 acagtgtatccactgacatctcttcccctgctggcatattgtactcttcc 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 acagtgtatccactgacatctcttcccctgctggcatattgtactcttcc 1
>KJC_c12560
Length = 707
Score = 347 bits (175), Expect = 3e-95
Identities = 177/178 (99%)
Strand = Plus / Minus
Query: 675 agttcacctctatcctttcctaaagggtctgctgggtcgacagaacagaactcccacaat 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agttcacctctatcctttcctaaagggtctgctgggtcgacagaacagaactcccacaat 334
Query: 735 cataatcgtctggtctattttgcttgcttccatcttctcccttttgtgggttcgcataga 794
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 333 cataatcgtctggtctattttgcttgcttccatcttcncccttttgtgggttcgcataga 274
Query: 795 tccattcctagccaagtcggatggcccacttttagaggagtgtggtttggactgcact 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tccattcctagccaagtcggatggcccacttttagaggagtgtggtttggactgcact 216
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 722 gaactcccacaatcataatcgtctggtc 749
||||||||||||||||||||||||||||
Sbjct: 389 gaactcccacaatcataatcgtctggtc 416
>KJC_c03583
Length = 483
Score = 103 bits (52), Expect = 7e-22
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 370 tggtggagaaacgagcaattttgggtgattggaggagtgtcagcacatctatttgctgtt 429
||||||||||| ||||| ||||||||||||||||| || ||| ||||||| |||||| |
Sbjct: 276 tggtggagaaatgagcagttttgggtgattggaggcgtttcatcacatctttttgctctc 217
Query: 430 ttccagggtctgttaaaggttctggctggtgttgatacaaacttcactgtgacatcaaaa 489
||||||||| || | ||||| |||||||||| | |||||||||||||| || ||||||
Sbjct: 216 ttccagggtttgctgaaggtgttggctggtgtcaacacaaacttcactgtcacttcaaaa 157
Query: 490 gcag 493
||||
Sbjct: 156 gcag 153
>KJC_c00976
Length = 1696
Score = 71.9 bits (36), Expect = 2e-12
Identities = 82/96 (85%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 335 tggaaatgagatggagtggagttgggcttgatgattggtggagaaacgagcaattttggg 394
|||||||||||||||| || || || ||||||| ||||||||||| || || |||||||
Sbjct: 111 tggaaatgagatggagcggtgtcggaattgatgaatggtggagaaatgaacagttttggg 52
Query: 395 tgattggaggagtgtcagcacatctatttgctgttt 430
| || |||||||| ||||| ||||| ||||||||||
Sbjct: 51 tcatcggaggagtttcagcccatct-tttgctgttt 17
>KJC_c09398
Length = 253
Score = 63.9 bits (32), Expect = 6e-10
Identities = 90/107 (84%), Gaps = 3/107 (2%)
Strand = Plus / Minus
Query: 335 tggaaatgagatggagtggagttgggcttgatgattggtggagaaacgagcaattttggg 394
|||||||||||||||| || || || ||||||| ||||||||||| || || ||| ||
Sbjct: 241 tggaaatgagatggagcggtgtcggaattgatgaatggtggagaaaaga-cagttt--gg 185
Query: 395 tgattggaggagtgtcagcacatctatttgctgttttccagggtctg 441
| || |||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct: 184 tcatcggaggagtttcagcccatctttttgctgttttccaaggtctg 138
>KJC_c01204
Length = 825
Score = 56.0 bits (28), Expect = 1e-07
Identities = 100/124 (80%)
Strand = Plus / Plus
Query: 14 ggcctgcatttaaaggttctgcgcccatcaatctttccgatcgtctacatcaggtccttc 73
||||||| ||||| || || || || || ||||| || ||||||||||| || || ||||
Sbjct: 397 ggcctgcgtttaaggggtcagctcctattaatctgtcagatcgtctacaccaagttcttc 456
Query: 74 ggtgggctcttggatctgttgaaatatttttaagcaggcactgtcctctgtggtatggtt 133
| ||||| ||||| ||||| ||||| || || ||||| || |||||| | |||||||| |
Sbjct: 457 gatgggcccttgggtctgtggaaattttcttgagcagacattgtcctatttggtatggct 516
Query: 134 atgg 137
||||
Sbjct: 517 atgg 520