Jatropha Genome Database

JcCB0027381.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0027381.10 - phase: 0 /partial
         (413 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02300                                                            555   e-158
KJC_c00494                                                             66   7e-11
KJC_s14691                                                             60   4e-09

>KJC_c02300 
          Length = 1592

 Score =  555 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                        
Query: 126  aaagggagatgagttgaaagtgaaagtgaacaaattgacatctacaaagacacagcttcc 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 aaagggagatgagttgaaagtgaaagtgaacaaattgacatctacaaagacacagcttcc 1533

                                                                        
Query: 186  ttactcgtattattctctcccttattgtcgcccaaccaagatagtggacagtgcagagaa 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 ttactcgtattattctctcccttattgtcgcccaaccaagatagtggacagtgcagagaa 1473

                                                                        
Query: 246  tcttggggaagtacttcgtggtgaccgcattgaaaattctccctatgtgtttaaaatgcg 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 tcttggggaagtacttcgtggtgaccgcattgaaaattctccctatgtgtttaaaatgcg 1413

                                                                        
Query: 306  ggagcaaaagatgtgcaatatcgtttgccgtcttaaacttgatgccaagactgtgaagga 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 ggagcaaaagatgtgcaatatcgtttgccgtcttaaacttgatgccaagactgtgaagga 1353

                                                    
Query: 366  gtttaaggagaggatagatgacgagtatcgagtcaacatg 405
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 gtttaaggagaggatagatgacgagtatcgagtcaacatg 1313


>KJC_c00494 
          Length = 1131

 Score = 65.9 bits (33), Expect = 7e-11
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 148 aaagtgaacaaattgacatctacaaagacacagcttcctta 188
           ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 278 aaagtgaacaaattgtcatctacaaagacacaacttcctta 318


>KJC_s14691 
          Length = 460

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 148 aaagtgaacaaattgacatctacaaagacacagcttcc 185
           ||||||||||||||| |||||||||||||||| |||||
Sbjct: 18  aaagtgaacaaattgtcatctacaaagacacaacttcc 55