Jatropha Genome Database

JcCB0027181.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0027181.10 + phase: 0 /partial
         (373 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07375                                                            458   e-129
KJC_c08257                                                            153   4e-37

>KJC_c07375 
          Length = 729

 Score =  458 bits (231), Expect = e-129
 Identities = 315/343 (91%)
 Strand = Plus / Plus

                                                                       
Query: 18  tctgacggtagaagcaatgatgcttgattctaaagcctctgatcttgacaaggaagaacg 77
           |||||||||||| |||||||||||||| ||||| |||||   ||| ||||| ||||||||
Sbjct: 135 tctgacggtagaggcaatgatgcttgactctaacgcctcccttctcgacaaagaagaacg 194

                                                                       
Query: 78  tcccgaggtgctttctatgctcccatcctatgaagggaaatcagttttggaatttggagc 137
           ||| ||||||||||| ||||||||| | |||||||| ||||| ||| |||||||||||||
Sbjct: 195 tcctgaggtgctttccatgctcccaccatatgaaggaaaatctgttctggaatttggagc 254

                                                                       
Query: 138 tggtattggtcgttttactggagaaatagcacagaatgctgggcagcttgttgctctgga 197
           |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct: 255 tggtattggtcgttttactggagaaatagcgcagaatgctggacagcttgttgctgtgga 314

                                                                       
Query: 198 cttcatagatagtgtgataaagaagaatgaaagcattaatgggcattacaagaatgtcaa 257
           |||||| |||| ||||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct: 315 cttcattgataatgtgataaagaagaatgaaagaattaatggacatcacaagaatgtcaa 374

                                                                       
Query: 258 gtttatatgcgctgatgtgacatcccaagacttgaaattttctgaaggatcagtggattt 317
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||
Sbjct: 375 gtttatatgcgctgatgtgacatccgaagacttgaaattttctgaagaatcggtggattt 434

                                                      
Query: 318 aatattctcaaattggctacttatgtatctctcagataaagag 360
           |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 435 aatattctcaaattggcttctaatgtatctctcagataaagag 477


>KJC_c08257 
          Length = 319

 Score =  153 bits (77), Expect = 4e-37
 Identities = 98/101 (97%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagcactccgttgatctgacggtagaagcaatgatgcttgattctaaagcctctgat 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 222 atggagcactccgttgatctgacggtagaagcaatgatgcttga-tctaaagcctctgat 280

                                                    
Query: 61  cttgacaaggaagaacgtcccgaggtgctttctatgctccc 101
           |||||||| |||| |||||||||||||||||||||||||||
Sbjct: 281 cttgacaa-gaag-acgtcccgaggtgctttctatgctccc 319