Jatropha Genome Database

JcCB0025551.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0025551.10 + phase: 0 
         (627 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07269                                                            957   0.0  

>KJC_c07269 
          Length = 656

 Score =  957 bits (483), Expect = 0.0
 Identities = 518/523 (99%), Gaps = 5/523 (0%)
 Strand = Plus / Plus

                                                                       
Query: 105 attttcctgcaagaaagctgcatcagttacagtaaaagattttgtttattctgggcttgg 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attttcctgcaagaaagctgcatcagttacagtaaaagattttgtttattctgggcttgg 60

                                                                       
Query: 165 cgttgcaggaaatacaacaaacattataaaagctgctgttacaccagcatttgctgcaca 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgttgcaggaaatacaacaaacattataaaagctgctgttacaccagcatttgctgcaca 120

                                                                       
Query: 225 atttcctggggtcaacgggcttggaatttccatggctcgtttagacttggcccctggagg 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttcctggggtcaacgggcttggaatttccatggctcgtttagacttggcccctggagg 180

                                                                       
Query: 285 agttattccgttccatacacatccaggagcatcagaagtgctagttgtaatacaagggac 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agttattccgttccatacacatccaggagcatcagaagtgctagttgtaatacaagggac 240

                                                                       
Query: 345 aatttgtgctggttttgtttcctctgctaataaagttttctttcaaacacttaaaaaggg 404
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 241 aatttgtgctggttttgtttcctctgctaataaag-tttctttcaaacactt-aaaaggg 298

                                                                       
Query: 405 agatattatggtatttccacaaggtttattgcattttcaaataaatggaggtgggtctcc 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agatattatggtatttccacaaggtttattgcattttcaaataaatggaggtgggtctcc 358

                                                                       
Query: 465 tgctcttgcatttgttagctttagcagtccatttccaggtcttcagattctcgactatgc 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgctcttgcatttgttagctttagcagtccatttccaggtcttcagattctcgactatgc 418

                                                                       
Query: 525 tcttttcggaaacgacttgccgtctgacattattgagatgactaccttcctagacgctgc 584
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcttttcgg-aacgacttgccgtctgacattattgagatgactaccttcctagacgctgc 477

                                                      
Query: 585 tcaggttaagaagctcaagggtgttctcggcggcacaaactga 627
           ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 478 tca-gttaagaagctcaa-ggtgttctcggcggcacaaactga 518