Jatropha Genome Database

JcCB0020561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0020561.10 + phase: 0 
         (477 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02035                                                            831   0.0  
KJC_c09483                                                             64   3e-10

>KJC_c02035 
          Length = 1030

 Score =  831 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Plus

                                                                       
Query: 59  ccgagaaacgcaagcacaggcaacaacaagaaaagccttacagaggtataaggatgagga 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccgagaaacgcaagcacaggcaacaacaagaaaagccttacagaggtataaggatgagga 60

                                                                       
Query: 119 agtggggaaagtgggtcgctgaaattagagaacccaacaaacgttctagaatttggcttg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtggggaaagtgggtcgctgaaattagagaacccaacaaacgttctagaatttggcttg 120

                                                                       
Query: 179 gctcttattctacccctatcgccgccgcgcgtgcatatgacaccgccgttttctacctta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gctcttattctacccctatcgccgccgcgcgtgcatatgacaccgccgttttctacctta 180

                                                                       
Query: 239 gaggcccttccgctagacttaatttccccgatttgatattccgcgatgacgaacagacaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggcccttccgctagacttaatttccccgatttgatattccgcgatgacgaacagacaa 240

                                                                       
Query: 299 gagacatgtctgctgcttctatacgcaaaaaagcaaccgaagttggggctcaggtggacg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagacatgtctgctgcttctatacgcaaaaaagcaaccgaagttggggctcaggtggacg 300

                                                                       
Query: 359 ccctgcaacaaacggctccccacagccatgcatcggatcagaactcgaaccgagtagtag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccctgcaacaaacggctccccacagccatgcatcggatcagaactcgaaccgagtagtag 360

                                                                      
Query: 419 tttcagagaaacctgacttgaaccagtatccgaacccggaaaattctgatgaagagtag 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttcagagaaacctgacttgaaccagtatccgaacccggaaaattctgatgaagagtag 419


>KJC_c09483 
          Length = 623

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                       
Query: 97  tacagaggtataaggatgaggaagtggggaaagtgggtcgctgaaattagagaacccaac 156
           |||| ||| |||||||||||||||||||| || ||||| ||||| || |||||||| || 
Sbjct: 523 tacaaagggataaggatgaggaagtgggggaaatgggtggctgagataagagaacctaat 464

                                           
Query: 157 aaacgttctagaatttggcttggctcttattc 188
           || || || || |||||||| ||||| |||||
Sbjct: 463 aagcggtcaaggatttggctcggctcctattc 432