Jatropha Genome Database

JcCB0019891.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0019891.20 + phase: 1 /pseudo/partial
         (211 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00031                                                            127   1e-29
KJC_c10604                                                            121   7e-28

>KJC_c00031 
          Length = 5527

 Score =  127 bits (64), Expect = 1e-29
 Identities = 182/225 (80%), Gaps = 21/225 (9%)
 Strand = Plus / Minus

                                                                        
Query: 5    tatgcttgctttcggtattccagagaaacaaatattgatcgaactcatatttgatcaatg 64
            |||||||||||| |||| ||| ||||||||||| |||||||||| ||||||||  |||||
Sbjct: 1447 tatgcttgcttttggtactccggagaaacaaatcttgatcgaacccatatttgcccaatg 1388

                                                                        
Query: 65   gttataatccgctttcggtaaaacttcatatg------------------cttcaacgaa 106
            | || |||| |||  |||||||||||||||||                  ||||||||||
Sbjct: 1387 gatacaatctgctcacggtaaaacttcatatggattcgatgtacttttatcttcaacgaa 1328

                                                                        
Query: 107  tagtgcagccaccaatgtaggttgaagcatacggttgcccggctagttaaacg---ttaa 163
            ||||||||||  ||||| |||| |||||||| |||||||||||| |||||| |   ||||
Sbjct: 1327 tagtgcagccttcaatgcaggtcgaagcatatggttgcccggctggttaaatgctgttaa 1268

                                                         
Query: 164  tgaaaatagtaattcactattcttaacaataggacctggtgactt 208
            |||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct: 1267 tgaaaatagtaattcattattcttaacaatagggcctggagactt 1223


>KJC_c10604 
          Length = 608

 Score =  121 bits (61), Expect = 7e-28
 Identities = 102/115 (88%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                       
Query: 97  cttcaacgaatagtgcagccaccaatgtaggttgaagcatacggttgcccggctagttaa 156
           ||||||||||||||||||||  ||||| |||| |||||||| |||||||||||| |||||
Sbjct: 506 cttcaacgaatagtgcagccttcaatgcaggtcgaagcatatggttgcccggctggttaa 447

                                                                  
Query: 157 acg---ttaatgaaaatagtaattcactattcttaacaataggacctggtgactt 208
           | |   |||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct: 446 atgctgttaatgaaaatagtaattcattattcttaacaatagggcctggagactt 392