Jatropha Genome Database

JcCB0019451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0019451.10 + phase: 0 
         (567 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08664                                                             72   2e-12
KJC_c07732                                                             56   9e-08

>KJC_c08664 
          Length = 689

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 136/168 (80%), Gaps = 1/168 (0%)
 Strand = Plus / Minus

                                                                       
Query: 373 tgtgacattgctataaattgggctggtggattgcatcatg-ctaagaaatgtgaggcatc 431
           |||||||||||||| ||||||||||||||  | ||||||| ||||||| || || || ||
Sbjct: 616 tgtgacattgctatcaattgggctggtggccttcatcatgactaagaagtgcgaagcttc 557

                                                                       
Query: 432 tggattttgttacatcaatgacttagtattgggaattttggagcttcttaaatatcatgc 491
           ||| ||||| ||  |||||||| | ||  | | ||| ||||||||||||||    |||| 
Sbjct: 556 tggcttttgctatgtcaatgacattgttctcgcaatcttggagcttcttaagacgcatga 497

                                                           
Query: 492 ccgtgttctatatatcgatatagacgtgcatcatggtgatggtgtgga 539
            |||||||| ||| ||||||||||| | || |||||||| ||||||||
Sbjct: 496 gcgtgttctctatgtcgatatagacattcaccatggtgacggtgtgga 449


>KJC_c07732 
          Length = 468

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 379 attgctataaattgggctggtggattgcatcatgctaaga 418
           |||||| | |||||||||||||| ||||||||||||||||
Sbjct: 160 attgctttgaattgggctggtggtttgcatcatgctaaga 121