Jatropha Genome Database

JcCB0018541.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0018541.10 + phase: 1 /partial
         (536 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12804                                                            965   0.0  

>KJC_c12804 
          Length = 574

 Score =  965 bits (487), Expect = 0.0
 Identities = 515/519 (99%), Gaps = 4/519 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttgtacaggtatagactaggagatgttgtgaaaatcgtgggcttccataactcaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26  gtttgtacaggtatagactaggagatgttgtgaaaatcgtgggcttccataactcaaccc 85

                                                                       
Query: 61  cagaactaaaattcgtatgcaggacaagcttactgcttacaataaacattgataagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  cagaactaaaattcgtatgcaggacaagcttactgcttacaataaacattgataagaaca 145

                                                                       
Query: 121 gtgagaaagacttacacttagcagtagatgaagcagcaaagctattagctgaagagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gtgagaaagacttacacttagcagtagatgaagcagcaaagctattagctgaagagaaaa 205

                                                                       
Query: 181 -ttgaagttgtcgattttagtag-cctagtggatctatcaacagagcctgggcattacgt 238
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 cttgaagttgtcgattttagtagtcctagtggatctatcaacagagcctgggcattacgt 265

                                                                       
Query: 239 gatcttctgggaaattaataaagaaccaactgatgagatcttgaaagagtgttgcaattg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gatcttctgggaaattaataaagaaccaactgatgagatcttgaaagagtgttgcaattg 325

                                                                       
Query: 299 cttggatcgatctttccttgatgcaggttacgttagttctcgcaagatcaatgctattgg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttggatcgatctttccttgatgcaggttacgttagttctcgcaagatcaatgctattgg 385

                                                                       
Query: 359 accccttgagcttcgagtagttcgcagaggaactttccagaaaattctagatcattatct 418
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 386 accccttgagcttcgagtagttcgcagaggaactttccag-aaattctagatcattatct 444

                                                                       
Query: 419 gggtttaggaactgttgttagccagttcaaaaccccgcgatgcgtcgctcccacgaacaa 478
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggg-ttaggaactgttgttagccagttcaaaaccccgcgatgcgtcgctcccacgaacaa 503

                                                  
Query: 479 cgtagtgttgcaaatcctaaacaataatgttgtcaagaa 517
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgtagtgttgcaaatcctaaacaataatgttgtcaagaa 542