Jatropha Genome Database

JcCB0017171.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0017171.10 + phase: 0 /TE
         (615 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01352                                                            771   0.0  

>KJC_c01352 
          Length = 514

 Score =  771 bits (389), Expect = 0.0
 Identities = 389/389 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctcgtgtgtatgttggtaatctggatgcccgtgttactgagcgggaacttgaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  atgtctcgtgtgtatgttggtaatctggatgcccgtgttactgagcgggaacttgaagat 140

                                                                       
Query: 61  gaatttcgtagatttggagtcataagaagtgtatgggttgcacggaggccaccaggctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gaatttcgtagatttggagtcataagaagtgtatgggttgcacggaggccaccaggctat 200

                                                                       
Query: 121 gcattcattgactttgatgataaaagggatgcggaggatgcaattcatgaattagatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcattcattgactttgatgataaaagggatgcggaggatgcaattcatgaattagatggc 260

                                                                       
Query: 181 aagaatggttggagagttgagctttctcacaattccagaggtggtggtggccgcggtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaatggttggagagttgagctttctcacaattccagaggtggtggtggccgcggtggg 320

                                                                       
Query: 241 ggtcgtggtcgttttggtggttctgacttgaagtgttatgagtgtggggaacctggtcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcgtggtcgttttggtggttctgacttgaagtgttatgagtgtggggaacctggtcat 380

                                                                       
Query: 301 tttgcacgtgaatgccgcttacgtgttggtggtggaagacgacggagccgcagccccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcacgtgaatgccgcttacgtgttggtggtggaagacgacggagccgcagccccaga 440

                                        
Query: 361 tatcgcaggagtccaagctatggtcgaag 389
           |||||||||||||||||||||||||||||
Sbjct: 441 tatcgcaggagtccaagctatggtcgaag 469



 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 47/48 (97%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                           
Query: 450 aggagctatagcccccgtggacgatcccccaaacgacgcagcgtttca 497
           ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 468 aggagctatagcccccgtggacgatcccccaaacg-cgcagcgtttca 514