Jatropha Genome Database

JcCB0016381.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0016381.20 - phase: 0 
         (1725 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04377                                                            167   1e-40
KJC_c09499                                                            123   2e-27

>KJC_c04377 
          Length = 804

 Score =  167 bits (84), Expect = 1e-40
 Identities = 226/272 (83%), Gaps = 1/272 (0%)
 Strand = Plus / Plus

                                                                       
Query: 469 tgggatggaaatccaaatattgtacttgatatcaatactagagttggtgttgctctaccc 528
           |||||||| ||||||| ||| ||||||||||| || |||||| |||| ||| || | || 
Sbjct: 161 tgggatgggaatccaagtatagtacttgatattaagactagacttggagttcct-tgcct 219

                                                                       
Query: 529 attcaggtgaaaaatattggattcactggggttttcaggttaatcttcaagcctctagtt 588
            | ||||||||| |||||||||| ||||||||||||||||| ||||| ||||| ||||| 
Sbjct: 220 gtgcaggtgaaagatattggatttactggggttttcaggttgatctttaagccgctagtc 279

                                                                       
Query: 589 gaagaaattcctggttttggagctgtttcttattctttaagagagaagaaaaagctggat 648
           || ||  ||||| | ||||||||||||||||||||  | ||  | ||||||||| |||||
Sbjct: 280 gatgagtttccttgctttggagctgtttcttattccctgaggcaaaagaaaaagttggat 339

                                                                       
Query: 649 tttacacttaaggttattggtggtgacctatcagcaatccctggaatttctgatgctatt 708
           || |||||||| ||| ||||||| ||| |||||||||| |||||||||  ||||||||||
Sbjct: 340 ttcacacttaaagttgttggtggggacatatcagcaattcctggaattagtgatgctatt 399

                                           
Query: 709 gaggaaacaatacgcgacgctattgaagattc 740
           |||   |||||||| || ||  ||||||||||
Sbjct: 400 gagcggacaatacgggatgccgttgaagattc 431


>KJC_c09499 
          Length = 802

 Score =  123 bits (62), Expect = 2e-27
 Identities = 182/222 (81%)
 Strand = Plus / Minus

                                                                        
Query: 1396 atgggaaaggctgatccttatgttgtccttcagatgaaaaaatctgacacaaaagtcaaa 1455
            ||||||||||||||||| |||||||||||    ||||| ||||| || ||||    ||||
Sbjct: 746  atgggaaaggctgatccctatgttgtcctcacaatgaagaaatcagaaacaaggaacaaa 687

                                                                        
Query: 1456 accagggttgtaaatgagagcctcaatcctgtttggaatcaaacatttgactttgttgta 1515
            ||||||||||| ||||| ||  | || ||||||||||| ||||| |||||||||||||| 
Sbjct: 686  accagggttgtgaatgacagtttgaaccctgtttggaaccaaacctttgactttgttgtt 627

                                                                        
Query: 1516 gaggatgcattacatgatatgctaatattggaagtttgggatcatgacactttcgggaag 1575
            ||||||| | ||||||||||| | ||  | |||||||||||||||||||| || || |||
Sbjct: 626  gaggatggactacatgatatgttgattgttgaagtttgggatcatgacacatttggcaag 567

                                                      
Query: 1576 gataaaattgggagatgcataatgacactgaccagggttatt 1617
            ||  | || || ||||||||  ||||| |||| |||||||||
Sbjct: 566  gactatatgggaagatgcatcctgacattgacaagggttatt 525