Jatropha Genome Database

JcCB0015511.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0015511.20 + phase: 0 /pseudo/partial
         (717 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07721                                                            250   4e-66
KJC_c01777                                                             56   1e-07

>KJC_c07721 
          Length = 760

 Score =  250 bits (126), Expect = 4e-66
 Identities = 133/134 (99%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                       
Query: 509 acaggacatatgatgcaggttgcaatggaggcctcatggaaaacgcctttcagtttatca 568
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1   acaggacatatgatgcaggttgcaatggaggcctcatggaaa-cgcctttcagtttatca 59

                                                                       
Query: 569 tacaaaatggtggcattgacactgaacaagactatccttatctagccgttgatggcacat 628
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  tacaaaatggtggcattgacactgaacaagactatccttatctagccgttgatggcacat 119

                         
Query: 629 gcgacaaaaccaag 642
           ||||||||||||||
Sbjct: 120 gcgacaaaaccaag 133


>KJC_c01777 
          Length = 1112

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 193/248 (77%)
 Strand = Plus / Minus

                                                                        
Query: 352  gttgattggagagaggaaggagctgttaatccgatcaaagatcaaggaaattgtggcagc 411
            ||||||||||||||  |||| ||||||  |||  ||||  |||||||| | ||||| || 
Sbjct: 1061 gttgattggagagaaaaaggggctgttgttcctgtcaagaatcaaggacagtgtgggagt 1002

                                                                        
Query: 412  tgctgggcattttcaacaatagcagcaatagaaggaataaacaagattgtaacgggggaa 471
            |||||||| || |||||  | || ||| ||||||| || ||| |||||||||| || || 
Sbjct: 1001 tgctgggctttctcaactgttgctgcagtagaagggattaaccagattgtaactggtgat 942

                                                                        
Query: 472  ctactatctctatcagtacaagaacttgtagactgtgacaggacatatgatgcaggttgc 531
            ||| | ||||||||||  || ||  | ||||| ||||| ||  ||||| |    || |||
Sbjct: 941  ctaatctctctatcagagcaggagttggtagattgtgatagatcatataaccagggatgc 882

                                                                        
Query: 532  aatggaggcctcatggaaaacgcctttcagtttatcatacaaaatggtggcattgacact 591
            |||||||| || |||||  | |||||| | ||||| || ||||||||||| ||||| |||
Sbjct: 881  aatggaggtcttatggactatgcctttgaatttattatccaaaatggtggtattgatact 822

                    
Query: 592  gaacaaga 599
            ||||||||
Sbjct: 821  gaacaaga 814