Jatropha Genome Database

JcCB0013291.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0013291.20 - phase: 0 /pseudo/partial
         (471 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11840                                                            537   e-153
KJC_c05205                                                             50   5e-06

>KJC_c11840 
          Length = 387

 Score =  537 bits (271), Expect = e-153
 Identities = 271/271 (100%)
 Strand = Plus / Plus

                                                                       
Query: 201 gtgggaacttgccactgagaagatcccttgggataatctcaactcaatgcaggtgattgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgggaacttgccactgagaagatcccttgggataatctcaactcaatgcaggtgattgg 60

                                                                       
Query: 261 agctgtaggtttcatgaaccaacgcttagagatccccaaagatgttgatccacagtgggc 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agctgtaggtttcatgaaccaacgcttagagatccccaaagatgttgatccacagtgggc 120

                                                                       
Query: 321 ttctacaattgagagttgctggcacagcaatcctcagtgccgtccatctttccaagaact 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttctacaattgagagttgctggcacagcaatcctcagtgccgtccatctttccaagaact 180

                                                                       
Query: 381 gctggaaaagcttagggatctgcagagacaatacgcaattcaattccaggcggcccgttc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gctggaaaagcttagggatctgcagagacaatacgcaattcaattccaggcggcccgttc 240

                                          
Query: 441 tgcagctggagataacacacaaaaggaatta 471
           |||||||||||||||||||||||||||||||
Sbjct: 241 tgcagctggagataacacacaaaaggaatta 271


>KJC_c05205 
          Length = 637

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 155 tggatggcgccagaagttttgcgaaatgaaccctcagatgaaaaatgtg 203
           |||||||| ||||||||  || |||||||||| ||||||||||| ||||
Sbjct: 157 tggatggccccagaagtgctgagaaatgaaccttcagatgaaaagtgtg 109