Jatropha Genome Database

JcCB0012961.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0012961.10 - phase: 2 /pseudo/partial
         (1078 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00644                                                            274   4e-73

>KJC_c00644 
          Length = 1725

 Score =  274 bits (138), Expect = 4e-73
 Identities = 261/302 (86%)
 Strand = Plus / Minus

                                                                       
Query: 591 ctagtgaaggtggtgcttctgcatttaagctggactacaaggggcaacctgcatgcttgg 650
           |||||||||||||| || | | |||||||||||||||||| || ||| ||||||| ||||
Sbjct: 820 ctagtgaaggtggttctgcagtatttaagctggactacaaaggacaagctgcatgtttgg 761

                                                                       
Query: 651 ctcagtcacatcaacttcacaagcaaatggcaatctgtggtgataaagaacgtgtctttg 710
           | ||||||| ||| ||||||||||||||||| |||||||||||    || ||||| ||||
Sbjct: 760 cacagtcacctcagcttcacaagcaaatggctatctgtggtgactttgagcgtgtgtttg 701

                                                                       
Query: 711 aggtcggttctgttttcaaagcagaggaatcttacacacctaggcatctctgcgagtttg 770
           || | ||| ||||||||| ||||||||| |||||||| | |||||||||||| |||||||
Sbjct: 700 agattggtcctgttttcagagcagaggactcttacactcataggcatctctgtgagtttg 641

                                                                       
Query: 771 tgggtcatgatgttgaaatggagattaaaaaacactattctgaggtaatggatgttgttg 830
           | |||| |||||||||||||||||||||||  ||||||| ||||||||||||| ||||||
Sbjct: 640 ttggtcttgatgttgaaatggagattaaaaggcactattttgaggtaatggatattgttg 581

                                                                       
Query: 831 atcggttatttatcacgatttttgactatttgaatgagcattgcaagaatgaacttgagg 890
           |||| |||||| || | || || ||||||||||||||| | |||||||| ||||||||||
Sbjct: 580 atcgattatttgtctcaatattcgactatttgaatgagaactgcaagaaggaacttgagg 521

             
Query: 891 ct 892
           ||
Sbjct: 520 ct 519