Jatropha Genome Database

JcCB0012061.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0012061.30 - phase: 2 /partial
         (403 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01599                                                            105   8e-23

>KJC_c01599 
          Length = 2523

 Score =  105 bits (53), Expect = 8e-23
 Identities = 143/173 (82%)
 Strand = Plus / Minus

                                                                        
Query: 14   gatcctgatgaggcaactgacaatgacatgaaaggtatcgaggacgcttatgttgataag 73
            ||||||||||||||||  |  ||||||| ||||| | | ||||| ||   || |||| ||
Sbjct: 1010 gatcctgatgaggcaaaggctaatgacaagaaagatgttgaggatgccagtgatgatgag 951

                                                                        
Query: 74   aagaaaggcgaatatgcaaagttttggaatgagcttggcgagtccatcaaactcaacatt 133
            ||||||||| ||||||||||||| ||||||||| ||||| |||| || ||||||  ||| 
Sbjct: 950  aagaaaggccaatatgcaaagttctggaatgagtttggcaagtctataaaactcggcatc 891

                                                                 
Query: 134  atggaagatgcaactaaccggaacatattagcaaagtttctcaaatttgaaag 186
            || ||||||||||||||| | |||| ||| |||||| |||||| |||||||||
Sbjct: 890  attgaagatgcaactaacagaaacagattggcaaagcttctcagatttgaaag 838