Jatropha Genome Database

JcCB0011561.50
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0011561.50 - phase: 0 /partial/short
         (144 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08266                                                            272   2e-73
KJC_s19634                                                             62   4e-10

>KJC_c08266 
          Length = 724

 Score =  272 bits (137), Expect = 2e-73
 Identities = 144/145 (99%), Gaps = 1/145 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgataatctgcggcagcaaacgctacaacaaatgcaccgcatattgacaacccgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gctgataatctgcggcagcaaacgctacaacaaatgcaccgcatattgacaacccgccag 191

                                                                       
Query: 61  tcagctcgtgctcttcttgctatccatgattac-ttttccagattacgtgctctcagttc 119
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 190 tcagctcgtgctcttcttgctatccatgattacgttttccagattacgtgctctcagttc 131

                                    
Query: 120 cctttggcttgctcgaccgagagag 144
           |||||||||||||||||||||||||
Sbjct: 130 cctttggcttgctcgaccgagagag 106


>KJC_s19634 
          Length = 298

 Score = 61.9 bits (31), Expect = 4e-10
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgataatctgcggcagcaaacgctacaacaaatgcaccgcatattgacaacccgccag 60
           |||||||||||| | ||||| || ||  |||||||||| || |||||||||||| | |||
Sbjct: 171 gctgataatctgagacagcagactcttgaacaaatgcatcgtatattgacaaccaggcag 230

                          
Query: 61  tcagctcgtgctctt 75
           || ||||||||||||
Sbjct: 231 tctgctcgtgctctt 245