Jatropha Genome Database

JcCB0011561.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0011561.40 + phase: 0 
         (399 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09513                                                            690   0.0  

>KJC_c09513 
          Length = 444

 Score =  690 bits (348), Expect = 0.0
 Identities = 359/362 (99%), Gaps = 2/362 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgtttacgttgagaagcttgaaggtgccgcccaactcggcgagtctggaggaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  atggcgtttacgttgagaagcttgaaggtgccgcccaactcggcgagtctggaggaggca 144

                                                                       
Query: 61  agggctcgagtgtttgatttctttagaacggcttgcagatccattcctaccataatggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agggctcgagtgtttgatttctttagaacggcttgcagatccattcctaccataatggac 204

                                                                       
Query: 121 atctacaacttacaggacgtcgttaccgtttccgagctccgttccagcatcgcctctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atctacaacttacaggacgtcgttaccgtttccgagctccgttccagcatcgcctctcag 264

                                                                       
Query: 181 atccgcaagaactccaacgtcaccaatcccaaggtgattgatatgctgctattcaaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 265 atccgcaagaactccaacgtcaccaatcccaaggtgattgatatgctgctattcaaag-- 322

                                                                       
Query: 241 atggaagagctgaacaacattgtagaacatgcaaagcagcgtcatcatattattggccaa 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atggaanagctgaacaacattgtagaacatgcaaagcagcgtcatcatattattggccaa 382

                                                                       
Query: 301 tatgtagtgggtcagcatgggcttgtgcaggatttggacagtaaagatcaaggcatgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatgtagtgggtcagcatgggcttgtgcaggatttggacagtaaagatcaaggcatgtcc 442

             
Query: 361 ga 362
           ||
Sbjct: 443 ga 444