Jatropha Genome Database

JcCB0011381.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0011381.20 - phase: 0 
         (1761 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04144                                                             54   1e-06

>KJC_c04144 
          Length = 892

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 84/103 (81%)
 Strand = Plus / Minus

                                                                       
Query: 653 aaaagagcaatgttcatggcttccctgcagggctatgtcctacagtaggaattggtgggc 712
           ||||||| || || |||||||| ||||| ||| | ||||| || || ||| ||||||| |
Sbjct: 559 aaaagagtaaagtccatggctttcctgctggggtttgtcccactgttggagttggtggcc 500

                                                      
Query: 713 attttagtggagggggctttggtactttgttaagaaaatatgg 755
           || |||||||||| || | ||||| | |||| |||||||||||
Sbjct: 499 atattagtggaggtgggtatggtaatatgttgagaaaatatgg 457