Jatropha Genome Database

JcCB0011381.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0011381.10 + phase: 2 /pseudo/partial
         (412 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05944                                                            129   6e-30

>KJC_c05944 
          Length = 679

 Score =  129 bits (65), Expect = 6e-30
 Identities = 117/133 (87%), Gaps = 1/133 (0%)
 Strand = Plus / Minus

                                                                       
Query: 124 ggggttgctgcttgtggttatgaggataacgaagttgagaattttgaaatataaattatc 183
           |||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 162 ggggttgccgcttgtggttatgaggataaggaggttgagaa-tttgaaatataaattatc 104

                                                                       
Query: 184 tggatttcttcgttgggatactactgccaaattatcccttcctgttcaaattgcagccat 243
           |||||||||||   | ||| | ||  | |||||||||||||||||||||||||| ||  |
Sbjct: 103 tggatttcttcagcgagatgccacaacgaaattatcccttcctgttcaaattgcggctgt 44

                        
Query: 244 cacttccttactg 256
           |||||||||||||
Sbjct: 43  cacttccttactg 31