Jatropha Genome Database

JcCB0010741.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0010741.10 + phase: 1 /partial
         (455 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06093                                                            611   e-175

>KJC_c06093 
          Length = 602

 Score =  611 bits (308), Expect = e-175
 Identities = 329/332 (99%), Gaps = 3/332 (0%)
 Strand = Plus / Minus

                                                                       
Query: 79  aggatgagacaaggcaccttcatatatggcatgcgtctcaccatcatcattttagacaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aggatgagacaaggcaccttcatatatggcatgcgtctcaccatcatcattttagacaaa 277

                                                                       
Query: 139 aaatagggcttgatttatctgatgatgatgaaacccaacatacgaccaagtttgagactg 198
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aa-tagggcttgatttatctgatgatgatgaaacccaacatacgaccaagtttgagactg 218

                                                                       
Query: 199 catctcaccctcaaggatctgtggttgctcccatggctggtttggtggttaaggttgttg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 catctcaccctcaaggatctgtggttgctcccatggctggtttggtggttaaggttgttg 158

                                                                       
Query: 259 tgaaggatggatcaaaggtggaggaagggcaacccgtattagtgttagaagcaatgaaga 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tgaaggatggatcaaaggtggaggaagggcaacccgtattagtgttagaagcaatgaaga 98

                                                                       
Query: 319 tggagcatgttgt-aaaggcaccattagctgg-ctatgttcatgggcttcaagtcacagc 376
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 97  tggagcatgttgtaaaaggcaccattagctggtctatgttcatgggcttcaagtcacagc 38

                                           
Query: 377 tggccagcaggtttcagacagtactcttcttt 408
           ||||||||||||||||||||||||||||||||
Sbjct: 37  tggccagcaggtttcagacagtactcttcttt 6