Jatropha Genome Database

JcCB0010451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0010451.10 - phase: 0 /partial
         (465 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05339                                                            844   0.0  

>KJC_c05339 
          Length = 640

 Score =  844 bits (426), Expect = 0.0
 Identities = 459/465 (98%), Gaps = 5/465 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatcaagggcaaggcttttcaaggaatacaaagaggtgcagcgagagaaagcagcagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gcatcaagggcaaggcttttcaaggaatacaaagaggtgcagcgagagaaagcagcagat 208

                                                                       
Query: 61  cctgatattcaattagtttgcgatgattctaacatcttcaagtggactgctcttatcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 209 cctgatattcaattagtttgcgatgattctaacatcttcaagtggactgctct-atcaag 267

                                                                       
Query: 121 ggaccaacagagacaccttatgagggtggagttttccaacttgccttctctgttccggag 180
           |||| ||||||||||||||||||||   |||||||||||||||| |||||||||||||||
Sbjct: 268 ggac-aacagagacaccttatgaggt--gagttttccaacttgc-ttctctgttccggag 323

                                                                       
Query: 181 cagtatcctttgcaacctcctcaagtgcggttcttgacaaaaatatttcatcccaatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtatcctttgcaacctcctcaagtgcggttcttgacaaaaatatttcatcccaatgtg 383

                                                                       
Query: 241 cattttaagacaggagagatatgtcttgatatcttgaagaatgcatggagcccagcatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cattttaagacaggagagatatgtcttgatatcttgaagaatgcatggagcccagcatgg 443

                                                                       
Query: 301 acgcttcagtctgtttgcagggctataattgcgttgatggcccaccctgaacctgatagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acgcttcagtctgtttgcagggctataattgcgttgatggcccaccctgaacctgatagc 503

                                                                       
Query: 361 cctttaaactgtgattcaggcaaccttctgcgttctggtgatatcagaggttatcaatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctttaaactgtgattcaggcaaccttctgcgttctggtgatatcagaggttatcaatcc 563

                                                        
Query: 421 atggcaagaatgtatactagactcgcagcctcaccaaagaaaggg 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggcaagaatgtatactagactcgcagcctcaccaaagaaaggg 608