Jatropha Genome Database

JcCB0008751.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0008751.10 - phase: 0 /pseudo/partial
         (568 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10566                                                            642   0.0  

>KJC_c10566 
          Length = 856

 Score =  642 bits (324), Expect = 0.0
 Identities = 333/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 154 gaagctattgatttagaggttgctgaagaggttatggaagccgggtgtgttactggtgat 213
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 590 gaagctattgatttagaggtcgctgaagaggttatggaagccgggtgtattactggtgat 531

                                                                       
Query: 214 agaattaacgggcttgttgatggggtttctggtacttggtatgtcaagtttgataccttc 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agaattaacgggcttgttgatggggtttctggtacttggtatgtcaagtttgataccttc 471

                                                                       
Query: 274 actcctgcagcagaacgagggcttccagtcacgagagttattagccgaatgactttgcaa 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 actcctgcagcagaacgagggcttccagtcacgagagttattagccgaatgactttgcaa 411

                                                                       
Query: 334 caaatccttgctcttgcagttggagaagatgtgattcgaaatgaaagtaatgttgttagt 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 caaatccttgctcttgcagttggagaagatgtgattcgaaatgaaagtaatgttgttagt 351

                                                                       
Query: 394 tttcaggatgatggggataaggtcactgtgacccttgagaatggacagcatttcgaaggt 453
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tttcaggatgacggggataaggtcactgtgacccttgagaatggacagcatttcgaaggt 291

                                               
Query: 454 gatctcctagttggtgctgatggaatatggtcaaag 489
           ||||||||||||||||||||||||||||||||||||
Sbjct: 290 gatctcctagttggtgctgatggaatatggtcaaag 255



 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 94  ggattggtttttgcactagcaactaggaggaaggattttgaagtgttagttttttagaag 153
           ||||||||||||||||| ||| ||| |||||||| |||||| |||||||||||| |||||
Sbjct: 725 ggattggtttttgcactggcagctaagaggaagggttttgaggtgttagtttttgagaag 666

             
Query: 154 ga 155
           ||
Sbjct: 665 ga 664