Jatropha Genome Database

JcCB0008691.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0008691.20 + phase: 0 
         (747 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07826                                                            737   0.0  
KJC_c01250                                                             52   2e-06

>KJC_c07826 
          Length = 405

 Score =  737 bits (372), Expect = 0.0
 Identities = 386/388 (99%), Gaps = 2/388 (0%)
 Strand = Plus / Minus

                                                                       
Query: 358 gattcaagggctgcaact-ccagagcctcaaactgcacaaatgactattttctatgctgg 416
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gattcaagggctgcaactaccagagcctcaaactgcacaaatgactattttctatgctgg 338

                                                                       
Query: 417 aaaagtaattgtgttcaatgattttccagctgataaggctaaggaaattatgcagttggc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaaagtaattgtgttcaatgattttccagctgataaggctaaggaaattatgcagttggc 278

                                                                       
Query: 477 tagcaaaggtagttcccagaacttcactcggtttccttctgctccagtcaagagtgtttc 536
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 277 tagcaaaggtagttcccagaact-cactcggtttccttctgctccagtcaagagtgtttc 219

                                                                       
Query: 537 tcctgtttttgctcctaatgcagcagctagaccaacaattgaatctagcagttcacgccc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tcctgtttttgctcctaatgcagcagctagaccaacaattgaatctagcagttcacgccc 159

                                                                       
Query: 597 ttctagtccaggccccaattctgttcctaatttctccaataatctgattcaagaccatat 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttctagtccaggccccaattctgttcctaatttctccaataatctgattcaagaccatat 99

                                                                       
Query: 657 ccaaccttcacctcaaactattaccagtgatctgccaattgcaaggagagcttcccttca 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ccaaccttcacctcaaactattaccagtgatctgccaattgcaaggagagcttcccttca 39

                                       
Query: 717 gcgatttttggagaagagaaaagatagg 744
           ||||||||||||||||||||||||||||
Sbjct: 38  gcgatttttggagaagagaaaagatagg 11


>KJC_c01250 
          Length = 1250

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 691 ccaattgcaaggagagcttcccttcagcgatttttggagaag 732
           |||||||||||||||  ||| |||||||||||||| ||||||
Sbjct: 613 ccaattgcaaggagacattctcttcagcgattttttgagaag 572