Jatropha Genome Database

JcCB0008631.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0008631.20 + phase: 0 /partial
         (735 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05909                                                            694   0.0  

>KJC_c05909 
          Length = 561

 Score =  694 bits (350), Expect = 0.0
 Identities = 383/390 (98%), Gaps = 3/390 (0%)
 Strand = Plus / Minus

                                                                       
Query: 73  aatgaggaagagaacgaggaggatgatgataatcaaggtttctatatggaaaatcacagg 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatgaggaagagaacgaggaggatgatgataatcaaggtttctatatggaaaatcacagg 328

                                                                       
Query: 133 aatggaaatacaattatgaatacaaggagcattcataagctttaccgtaatggaattggg 192
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aacggaaatacaattatgaatacaaggagcattcataagctttaccgtaatggaattggg 268

                                                                       
Query: 193 ggaagtactcccagtaatgtgagcggaagcggttctggtgggagtgctggcagtggtttt 252
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 ggaagtactcccagtaatgtgagcggaagcggttctggtgggagtgctggcaatggtttt 208

                                                                       
Query: 253 agaattagaatacctaccgaagtgagtatagctcaaccaggacccaagttttatgccaaa 312
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 207 agaattagaatacctaccggagtgagtatagctcaaccaggacccaag-tttatgccaaa 149

                                                                       
Query: 313 gttgatcagaagtacactggaaaccctaatttgagttctaactcgaattctaagcctaat 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gttgatcagaagtacactggaaaccctaatttgagttctaactcgaattctaagcctaat 89

                                                                       
Query: 373 tttggagttgggactgggtctggatccgggttggggagtagtagggttttaaggggttca 432
           |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 88  tttggagttgggactgggtctggatccgggtt-gggagtagtaggg-tttgaggggttca 31

                                         
Query: 433 gatgaaattgggaagaagagggagagagaa 462
           ||||||||||||||||||||||||||||||
Sbjct: 30  gatgaaattgggaagaagagggagagagaa 1