Jatropha Genome Database

JcCB0007551.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0007551.20 + phase: 0 /partial
         (1626 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11698                                                            127   9e-29

>KJC_c11698 
          Length = 515

 Score =  127 bits (64), Expect = 9e-29
 Identities = 126/144 (87%), Gaps = 2/144 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1468 tctgagtataatattactgtggtagtcaagcgggaagattgtataagagctttaaaagct 1527
            |||||||| |||||||| ||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 515  tctgagtacaatattacagtggtagtcaaacgtgaagattgtataagggctttaaa-gct 457

                                                                        
Query: 1528 gtccactcaagattttttct-ctcaaaaaccacaatagcaatggggatcattggacctgg 1586
            || || ||||| |||| ||  |||||||||||| |||||||||||||| |||||||||||
Sbjct: 456  gttcattcaaggttttatcaactcaaaaaccactatagcaatggggattattggacctgg 397

                                    
Query: 1587 tttgatcggtgccacattgcttga 1610
             ||||| |||||| |||| |||||
Sbjct: 396  gttgattggtgccgcattacttga 373