Jatropha Genome Database

JcCB0007071.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0007071.20 - phase: 0 
         (3051 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03441                                                             74   2e-12
KJC_c01512                                                             58   1e-07

>KJC_c03441 
          Length = 929

 Score = 73.8 bits (37), Expect = 2e-12
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                       
Query: 529 gaaaatatggaacttggaagagattctgatactgggggtcaggtaaaatatgttgttgaa 588
           ||||||||||| |||||| | |||||||||||||| |||||||| || |||||||| |||
Sbjct: 209 gaaaatatggagcttggacgtgattctgatactggtggtcaggttaagtatgttgtggaa 150

                
Query: 589 cttgc 593
           |||||
Sbjct: 149 cttgc 145


>KJC_c01512 
          Length = 2130

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1811 acaatggccttcttgttgaccctcatgatcaaaaagcaatagcagatgcacttctgaagc 1870
            ||||||| ||||||||||| ||||||||| | ||  | || || ||||| ||||| ||||
Sbjct: 1274 acaatgggcttcttgttgatcctcatgatgagaagtctattgctgatgctcttctaaagc 1333

                                             
Query: 1871 tagttgctgacaaaaacctctgggcagaatgcc 1903
            | |||||||||||  |||| |||||| ||||||
Sbjct: 1334 ttgttgctgacaagcacctttgggcaaaatgcc 1366



 Score = 52.0 bits (26), Expect = 8e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 793 tggcctcacatacctgaatttgttga 818
           ||||||||||||||||||||||||||
Sbjct: 267 tggcctcacatacctgaatttgttga 292