Jatropha Genome Database

JcCB0006821.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0006821.20 + phase: 0 /partial
         (816 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07732                                                             96   2e-19
KJC_c08664                                                             70   9e-12

>KJC_c07732 
          Length = 468

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                          
Query: 1  cgtgtcctgtatgttgatattgatgtccatcatggtgatggtgttgag 48
          ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 cgtgtcctgtatgttgatattgatgtccatcatggtgatggtgttgag 1


>KJC_c08664 
          Length = 689

 Score = 69.9 bits (35), Expect = 9e-12
 Identities = 66/75 (88%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                       
Query: 31  catggtgatggtgttgaggaggcattctatactactgacagggtcatgacagtctctttt 90
           |||||||| ||||| ||||||||||| || || |||||||| |||||||| || || |||
Sbjct: 465 catggtgacggtgtggaggaggcatt-tacaccactgacagagtcatgactgtttcattt 407

                          
Query: 91  cataaatttggagat 105
           |||||||||||||||
Sbjct: 406 cataaatttggagat 392



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 413 ggaatgttgcccgttgctggtgctatgagacag 445
           |||||||||| || |||||||||||||||||||
Sbjct: 86  ggaatgttgctcgctgctggtgctatgagacag 54