Jatropha Genome Database

JcCB0006821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0006821.10 - phase: 0 /pseudo
         (512 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07732                                                            630   0.0  
KJC_c12542                                                            333   2e-91

>KJC_c07732 
          Length = 468

 Score =  630 bits (318), Expect = 0.0
 Identities = 339/342 (99%), Gaps = 3/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatgcaaaccaccagcccaattcaaagcaatatcggcgtcaccacgattgagcttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atgatgcaaaccaccagcccaattcaaagcaatatcggcgtcaccacgattgagcttgac 187

                                                                       
Query: 61  ggccgccccaatcgaaccaccagcagacgcctgacaaaatccaaaaagcccatcaaaaac 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggc-gccccaatcgaaccaccagcagacgcctgacaaaatccaaaaagcccatcaaaaac 246

                                                                       
Query: 121 -aggacaatcctccccaacattaaacctcttaagatgcctattatgcgcagggtcggaca 179
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 caggacaatcctccccaacattaaacctcttaagatgcctattatgcgcagggtcggaca 306

                                                                       
Query: 180 gagactctggagacacagaagaaaggaacttgacatagtcgtcggaatggaacttccgga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagactctggagacacagaagaaaggaacttgacatagtcgtcggaatggaacttccgga 366

                                                                       
Query: 240 tatcggtggtaccggcggggaaaggccggttgatctccatccgacgatggagagagtagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tatcggtggtaccggcggggaaaggccggttgatctccatccgacgatggagagagtagt 426

                                                     
Query: 300 gcac-gatcaaattgtgtgccatgcgaatccggtgaggcttc 340
           |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcacggatcaaattgtgtgccatgcgaatccggtgaggcttc 468


>KJC_c12542 
          Length = 181

 Score =  333 bits (168), Expect = 2e-91
 Identities = 171/172 (99%)
 Strand = Plus / Minus

                                                                       
Query: 312 tgtgtgccatgcgaatccggtgaggcttcattgggtgtccctggccataatagtagtcgc 371
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tgtgtgccttgcgaatccggtgaggcttcattgggtgtccctggccataatagtagtcgc 113

                                                                       
Query: 372 cgatcgtgggctcgtagaaataggttacgcggcgctttttggcgtcggtgcccgtcgatg 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 cgatcgtgggctcgtagaaataggttacgcggcgctttttggcgtcggtgcccgtcgatg 53

                                                               
Query: 432 ggagagacacgccaccactatcgcccatttgcaaaaccctatttagtgaaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  ggagagacacgccaccactatcgcccatttgcaaaaccctatttagtgaaac 1