Jatropha Genome Database

JcCB0006421.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0006421.20 + phase: 0 
         (1284 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08443                                                            464   e-130

>KJC_c08443 
          Length = 481

 Score =  464 bits (234), Expect = e-130
 Identities = 241/242 (99%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1040 caacagatgaagccttgaaattgtggaaggaaaatgggttttcaagcctaataattgctg 1099
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1    caacagatgaagccttgaaattgtgga-ggaaaatgggttttcaagcctaataattgctg 59

                                                                        
Query: 1100 ctccagatctggatccttggagcttagtcaatgaaatcttgccacttctatcatattcag 1159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   ctccagatctggatccttggagcttagtcaatgaaatcttgccacttctatcatattcag 119

                                                                        
Query: 1160 ctccatttgctatctaccaccagtatcttcagcctctagcaacatgcatgcacaatctac 1219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  ctccatttgctatctaccaccagtatcttcagcctctagcaacatgcatgcacaatctac 179

                                                                        
Query: 1220 aacttgggaaaatggcaattggcttgcaaatttcagaaccttggctacgggaataccagg 1279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  aacttgggaaaatggcaattggcttgcaaatttcagaaccttggctacgggaataccagg 239

              
Query: 1280 tt 1281
            ||
Sbjct: 240  tt 241