Jatropha Genome Database

JcCB0005461.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0005461.30 - phase: 0 /partial
         (228 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09933                                                            200   1e-51
KJC_c10150                                                            133   2e-31

>KJC_c09933 
          Length = 654

 Score =  200 bits (101), Expect = 1e-51
 Identities = 157/169 (92%), Gaps = 5/169 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctctctggatcctacatgagttgccgtcaatgcttcaataatggttctggggatccc 60
           |||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||
Sbjct: 365 tttctctctggatcctacatgagtcgct-tcaatgcttcaataatggttctggg-atccc 308

                                                                       
Query: 61  tataatatttgttatgattgttatagcagaaacaacattgatcatcataaggatgctacc 120
           ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||  |
Sbjct: 307 tataacatttgt-atgattgt-atagcagaaacaacattgatcatcataaggatgcttac 250

                                                            
Query: 121 tttgtcgataatatacaactccactgcttcgcagttaaaggctctgcag 169
           || |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 249 tt-gtcgataatataaaactccattgcttcgcagttaaaggctctgcag 202



 Score = 87.7 bits (44), Expect = 1e-17
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                               
Query: 156 taaaggctctgcagataacaatggctccacaactcgaagctccggtggtaag 207
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 161 taaaggctctgcagataataatggcttcacaactcgaagctccggtggtaag 110


>KJC_c10150 
          Length = 665

 Score =  133 bits (67), Expect = 2e-31
 Identities = 105/117 (89%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                       
Query: 16  tacatgagttgccgtcaatgcttcaataatggttctggggatccctataatatttgttat 75
           ||||||||||||| |||||||||||||| ||||||||   | ||||||||| |||||| |
Sbjct: 312 tacatgagttgccttcaatgcttcaatagtggttctg---aaccctataatgtttgttgt 368

                                                                    
Query: 76  gattgttatagcagaaacaacattgatcatcataaggatgctacctttgtcgataat 132
           | ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 369 gcttgttatcgcaaaaacaacattgatcatcacaaggatgctacctttgtcgataat 425