Jatropha Genome Database

JcCB0005311.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0005311.20 - phase: 0 /partial
         (783 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03209                                                            617   e-176
KJC_c06204                                                            139   1e-32

>KJC_c03209 
          Length = 624

 Score =  617 bits (311), Expect = e-176
 Identities = 318/319 (99%), Gaps = 1/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 261 tcagttactttcaggtggtgactttgacattgatgtcgatgatttaagaaataacacacg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcagttactttcaggtggtgactttgacattgatgtcgatgatttaagaaataacacacg 565

                                                                       
Query: 321 ttacacaggtggctactctgaggggagtaggacaatcaaacttttctgggaggtaattag 380
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 ttacacaggtggctactctgaggg-agtaggacaatcaaacttttctgggaggtaattag 506

                                                                       
Query: 381 aggatttcaaccaaatgaaagatgcttgctgcttaagtttgtgaccagctgttctcgagc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggatttcaaccaaatgaaagatgcttgctgcttaagtttgtgaccagctgttctcgagc 446

                                                                       
Query: 441 tccgttactcgggttcaaacacttgcagccatcctttaccattcataaggttgcatgtga 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccgttactcgggttcaaacacttgcagccatcctttaccattcataaggttgcatgtga 386

                                                                       
Query: 501 tgcctctctttgggcaacaatcggaggacaggatgtggatcggcttccgtcagcttctac 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcctctctttgggcaacaatcggaggacaggatgtggatcggcttccgtcagcttctac 326

                              
Query: 561 atgctacaacactctcaag 579
           |||||||||||||||||||
Sbjct: 325 atgctacaacactctcaag 307



 Score =  165 bits (83), Expect = 2e-40
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                       
Query: 701 agcttccaacatacaaacgtgcaagcactttgagagcaaaacttctttatgcaatcagtt 760
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcttccaacatacaaacgtgcaagcactttgagagcaaaacttctttatgcaatcagtt 249

                                  
Query: 761 ccaacactggatttgaactttct 783
           |||||||||||||||||||||||
Sbjct: 248 ccaacactggatttgaactttct 226


>KJC_c06204 
          Length = 1006

 Score =  139 bits (70), Expect = 1e-32
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    cattatgatggtgatttcaaggatctctctctggacttcacagttacagaagaatcattt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  cattatgatggtgatttcaaggatctctctctggacttcacagttacagaagaatcattt 995

                      
Query: 61   ggtaaacggc 70
            ||||||||||
Sbjct: 996  ggtaaacggc 1005