Jatropha Genome Database

JcCB0004861.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0004861.20 - phase: 0 
         (1071 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05908                                                           1043   0.0  

>KJC_c05908 
          Length = 540

 Score = 1043 bits (526), Expect = 0.0
 Identities = 540/542 (99%), Gaps = 2/542 (0%)
 Strand = Plus / Minus

                                                                       
Query: 451 ctcttccacgagggtcttcgggtcactgacgctaagaccatggagattgtgtctatggtc 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctcttccacgagggtcttcgggtcactgacgctaagaccatggagattgtgtctatggtc 481

                                                                       
Query: 511 ttagttggtaaggttaataaggatttagtatctctaattaataaagcaggggccaccgcg 570
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttagttg-taaggttaataaggatttagtatctctaattaataaagcaggggccaccgcg 422

                                                                       
Query: 571 gttggtctctccggtatggacggccgccttcttatggctcgacccacccctaattccgct 630
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 421 gttggtctctccggtatggacggccgccttcttatggctcgacccacccctaat-ccgct 363

                                                                       
Query: 631 caattgggctttgtcggagaagtcacccgagttgattccactatcctacagccgcttatc 690
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caattgggctttgtcggagaagtcacccgagttgattccactatcctacagccgcttatc 303

                                                                       
Query: 691 gataacagccacattcccgtgattgcatctgtggcggcggatgagtccggccaatcatac 750
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gataacagccacattcccgtgattgcatctgtggcggcggatgagtccggccaatcatac 243

                                                                       
Query: 751 aacatcaatgctgatacggtggcaggggaattggcagcggctttgggagcggagaagttg 810
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aacatcaatgctgatacggtggcaggggaattggcagcggctttgggagcggagaagttg 183

                                                                       
Query: 811 attttgttgacggatgtggcggggatattggagaataaagatgatccaaagagtttggta 870
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 attttgttgacggatgtggcggggatattggagaataaagatgatccaaagagtttggta 123

                                                                       
Query: 871 aaggagattgatataaagggagtgaaaaaattaattgaagaaaagaaagttgctggtgga 930
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aaggagattgatataaagggagtgaaaaaattaattgaagaaaagaaagttgctggtgga 63

                                                                       
Query: 931 atgattcctaaggtgaattgttgtgtacggtcacttgctcaaggagtgaggactgctagt 990
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  atgattcctaaggtgaattgttgtgtacggtcacttgctcaaggagtgaggactgctagt 3

             
Query: 991 at 992
           ||
Sbjct: 2   at 1