Jatropha Genome Database

JcCB0004391.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0004391.20 - phase: 0 /partial
         (330 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00241                                                            654   0.0  

>KJC_c00241 
          Length = 1517

 Score =  654 bits (330), Expect = 0.0
 Identities = 330/330 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtttgaaaaatgcactggcatctggtgctgacaaggacgaagaagattcagaaggaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggtttgaaaaatgcactggcatctggtgctgacaaggacgaagaagattcagaaggaaga 621

                                                                       
Query: 61  actgcgttgcattttgcttgtgggtatggagaggtgaagtgtgctcaaatccttgttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actgcgttgcattttgcttgtgggtatggagaggtgaagtgtgctcaaatccttgttgag 561

                                                                       
Query: 121 gcgggagcaactgttgatgcactggataaaaataagaacactgcgcttcattatgcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcgggagcaactgttgatgcactggataaaaataagaacactgcgcttcattatgcagct 501

                                                                       
Query: 181 ggttatgggaggaaagagtgtgtggccctactgctagagaatggagctgctgttactctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggttatgggaggaaagagtgtgtggccctactgctagagaatggagctgctgttactctt 441

                                                                       
Query: 241 cagaacctggatggcaagacacccattgatgttgccaagctaaacaaccagcatgaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagaacctggatggcaagacacccattgatgttgccaagctaaacaaccagcatgaagta 381

                                         
Query: 301 ctgaagttgctcgagaaggatgccttcctt 330
           ||||||||||||||||||||||||||||||
Sbjct: 380 ctgaagttgctcgagaaggatgccttcctt 351