Jatropha Genome Database

JcCB0004021.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0004021.20 - phase: 0 
         (615 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09475                                                            389   e-108
KJC_s14446                                                            210   3e-54

>KJC_c09475 
          Length = 223

 Score =  389 bits (196), Expect = e-108
 Identities = 217/220 (98%), Gaps = 3/220 (1%)
 Strand = Plus / Minus

                                                                       
Query: 295 gtgccttgggaattatgcaaactcatgctatctatatactatagaaataacatgctagaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gtgccttgggaattatgcaaactcatgctatctatatactatagaaataacatgctagaa 161

                                                                       
Query: 355 tgcctcgtaaagcttttcaagggcctggaagcttttgaccg-caaacc-tccagaaaaat 412
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 160 tgcctcgtaaagcttttcaagggcctggaagcttttgaccgccaaaccgtccagaaaaat 101

                                                                       
Query: 413 caattgtgcagaaagtggc-aaatgcatatgagatgctaggtatgcttgaggaaaaagat 471
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 caattgtgcagaaagtggcaaaatgcatatgagatgctaggtatgcttgaggaaaaagat 41

                                                   
Query: 472 cgtgtggaacagaagtatatccatcttttctcagagacac 511
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  cgtgtggaacagaagtatatccatcttttctcagagacac 1


>KJC_s14446 
          Length = 117

 Score =  210 bits (106), Expect = 3e-54
 Identities = 106/106 (100%)
 Strand = Plus / Minus

                                                                       
Query: 295 gtgccttgggaattatgcaaactcatgctatctatatactatagaaataacatgctagaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gtgccttgggaattatgcaaactcatgctatctatatactatagaaataacatgctagaa 47

                                                         
Query: 355 tgcctcgtaaagcttttcaagggcctggaagcttttgaccgcaaac 400
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  tgcctcgtaaagcttttcaagggcctggaagcttttgaccgcaaac 1