Jatropha Genome Database

JcCB0003651.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0003651.20 + phase: 0 /pseudo
         (999 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00673                                                             84   7e-16
KJC_c06841                                                             82   3e-15

>KJC_c00673 
          Length = 848

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 111/134 (82%)
 Strand = Plus / Minus

                                                                       
Query: 619 gctgatataccaccagatgattatacttggagaaaatatggacagaaacccataaaggga 678
           |||||||| || || ||||||||  | ||||| || ||||| ||||| || || ||||| 
Sbjct: 323 gctgatatccctcctgatgattactcatggaggaagtatgggcagaagccaatcaagggt 264

                                                                       
Query: 679 tctccttatcccaggagctattacaaatgtagcagcatgaggggttgccctgcaagaaag 738
           |||||| ||||  || | |||||||||||||| |||||||| ||||| |||||||| |||
Sbjct: 263 tctcctcatcctcggggatattacaaatgtagtagcatgagaggttgtcctgcaaggaag 204

                         
Query: 739 catgtggaaagatg 752
           |||||||| |||||
Sbjct: 203 catgtggagagatg 190


>KJC_c06841 
          Length = 609

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 619 gctgatataccaccagatgattatacttggagaaaatatggacagaaacccataaaggga 678
           |||||||| ||||||||||||||| ||||||||||||||||||| |||||||| || |||
Sbjct: 363 gctgatattccaccagatgattat-cttggagaaaatatggacaaaaacccattaaagga 421

                
Query: 679 tctcc 683
           |||||
Sbjct: 422 tctcc 426