Jatropha Genome Database

JcCB0001411.50
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0001411.50 - phase: 0 /pseudo/partial
         (588 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03918                                                            601   e-172

>KJC_c03918 
          Length = 908

 Score =  601 bits (303), Expect = e-172
 Identities = 455/507 (89%), Gaps = 19/507 (3%)
 Strand = Plus / Plus

                                                                       
Query: 99  gtcaagataagaggcaggtcattgaattgtgaagtttgtggagaaaatgcagcatttaat 158
           |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| || 
Sbjct: 351 gtcaagataagaagcaggtcattgaattgtgaagtttgtggagaaactgcagcattcaac 410

                                                                       
Query: 159 gaaaagcaatttagagattttgattatgagaagtttactcagtctccattgtccacg--- 215
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||   
Sbjct: 411 caaaagcaatttagagattttgattatgagaagttcactcagtctccattgtccacggct 470

                                                                       
Query: 216 --------------cctgctttcagcaggctccagaataacctgtaaagacttcaatgag 261
                         |||||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct: 471 ccaccgaagttgaacctgctttcagcaggctc-agaataaccagtaaagacttcaacgag 529

                                                                       
Query: 262 aaagttgttaaaggggaagcgcacgtgttggtagatgtacgccctgcccaccatttcaag 321
           ||| | ||||||||||||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct: 530 aaaatcgttaaaggggaagggcacgtgttgctagatgtacgcc-tgcccaccatttcaag 588

                                                                       
Query: 322 attgttgctcttcccaatgccttgaacattccattaacaagtttggaggctaggttgcct 381
           |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 589 attgttgctcttcctaacgccttgaacattccattagcaagtttggaggctaggttgcct 648

                                                                       
Query: 382 gaaatctcatccgcattgaaggaagcaggaggctgcagaggtactgaatcagaatcaggc 441
           ||||||||||| |||||||||||||  ||||   |||||||| |||||||||||||||| 
Sbjct: 649 gaaatctcatctgcattgaaggaagagggagagcgcagaggtcctgaatcagaatcaggt 708

                                                                       
Query: 442 gtgagcctatacatagtatgtagaagagggaatgattcgcagagggccgttcaaatgtta 501
           |||||||||||| ||||||||||||||||||| ||||| |||||||| |||||| | |||
Sbjct: 709 gtgagcctatacgtagtatgtagaagagggaacgattcacagagggctgttcaattatta 768

                                                                       
Query: 502 cacagcaagggctttacttcagctaaagatatcattggaggcttggaggcctggtcccat 561
           || ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 769 caaagcaagggctttagttcagctaaagatatcattggaggcttggaagcctggtcctat 828

                                      
Query: 562 gatgtagatccaaaattccctacctat 588
           |||||||||||||||||||||||||||
Sbjct: 829 gatgtagatccaaaattccctacctat 855